Charles Auffray

According to our database, Charles Auffray authored at least 14 papers between 1984 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

GraphML-SBGN bidirectional converter for metabolic networks.

Irina Balaur, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray

J. Integr. Bioinform., 2022

2021

Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.

Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz

Bioinform., 2021

2020

Human-like layout algorithms for signalling hypergraphs: outlining requirements.

Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein

Briefings Bioinform., 2020

2019

Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.

Mansoor A. S. Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray

Briefings Bioinform., 2019

Community-driven roadmap for integrated disease maps.

Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider

Briefings Bioinform., 2019

2018

A computational framework for complex disease stratification from multiple large-scale datasets.

Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray

BMC Syst. Biol., 2018

2017

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.

Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray

J. Comput. Biol., 2017

2016

STON: exploring biological pathways using the SBGN standard and graph databases.

Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray

BMC Bioinform., 2016

Representing and querying disease networks using graph databases.

Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray

BioData Min., 2016

2013

Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a.

Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza

Biosyst., 2013

2009

Computational disease modeling - fact or fiction?

Jesper Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris S. Gutkin, Zoltán N. Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada

BMC Syst. Biol., 2009

2005

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.

Motohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo

Nucleic Acids Res., 2005

2003

Issues in Computational Methods for Functional Genomics and Systems Biology.

Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray

Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003

1984

A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens.

Jiri Novotny, Charles Auffray

Nucleic Acids Res., 1984