Chaok Seok
Orcid: 0000-0002-1419-9888Affiliations:
- Seoul National University, Department of Chemistry, Seoul, Republic of Korea
According to our database1,
Chaok Seok
authored at least 33 papers
between 2003 and 2024.
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Bibliography
2024
Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.
PLoS Comput. Biol., 2024
2023
Nucleic Acids Res., January, 2023
Benchmarking applicability of medium-resolution cryo-EM protein structures for structure-based drug design.
J. Comput. Chem., 2023
2022
GalaxyWater-CNN: Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network.
J. Chem. Inf. Model., 2022
2021
GalaxyHeteromer: protein heterodimer structure prediction by template-based and <i>ab initio</i> docking.
Nucleic Acids Res., 2021
GalaxyWater-wKGB: Prediction of Water Positions on Protein Structure Using wKGB Statistical Potential.
J. Chem. Inf. Model., 2021
2020
GalaxySagittarius: Structure- and Similarity-Based Prediction of Protein Targets for Druglike Compounds.
J. Chem. Inf. Model., 2020
J. Chem. Inf. Model., 2020
2019
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure.
Nucleic Acids Res., 2019
GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility.
J. Comput. Chem., 2019
GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters.
J. Comput. Chem., 2019
2018
GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors.
J. Chem. Inf. Model., 2018
2017
GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure.
Nucleic Acids Res., 2017
Absolute binding free energies for octa-acids and guests in SAMPL5 - Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des., 2017
Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des., 2017
J. Comput. Aided Mol. Des., 2017
2016
Nucleic Acids Res., 2016
Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.
J. Chem. Inf. Model., 2016
2015
GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.
Nucleic Acids Res., 2015
2014
Nucleic Acids Res., 2014
2013
Nucleic Acids Res., 2013
J. Comput. Chem., 2013
GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.
Bioinform., 2013
2012
Nucleic Acids Res., 2012
J. Chem. Inf. Model., 2012
GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.
BMC Bioinform., 2012
2011
J. Comput. Chem., 2011
2005
Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller.
J. Comput. Chem., 2005
2004
2003
J. Comput. Chem., 2003