Chaok Seok

Orcid: 0000-0002-1419-9888

Affiliations:
  • Seoul National University, Department of Chemistry, Seoul, Republic of Korea


According to our database1, Chaok Seok authored at least 33 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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2020
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Legend:

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Links

Online presence:

On csauthors.net:

Bibliography

2024
Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.
PLoS Comput. Biol., 2024

2023
HProteome-BSite: predicted binding sites and ligands in human 3D proteome.
Nucleic Acids Res., January, 2023

GalaxyDock2-HEME: Protein-ligand docking for heme proteins.
J. Comput. Chem., 2023

Benchmarking applicability of medium-resolution cryo-EM protein structures for structure-based drug design.
J. Comput. Chem., 2023

2022
GalaxyWater-CNN: Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network.
J. Chem. Inf. Model., 2022

2021
GalaxyHeteromer: protein heterodimer structure prediction by template-based and <i>ab initio</i> docking.
Nucleic Acids Res., 2021

GalaxyWater-wKGB: Prediction of Water Positions on Protein Structure Using wKGB Statistical Potential.
J. Chem. Inf. Model., 2021

2020
GalaxySagittarius: Structure- and Similarity-Based Prediction of Protein Targets for Druglike Compounds.
J. Chem. Inf. Model., 2020

Prediction of Molecular Electronic Transitions Using Random Forests.
J. Chem. Inf. Model., 2020

2019
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure.
Nucleic Acids Res., 2019

GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility.
J. Comput. Chem., 2019

GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters.
J. Comput. Chem., 2019

2018
GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors.
J. Chem. Inf. Model., 2018

2017
GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure.
Nucleic Acids Res., 2017

Absolute binding free energies for octa-acids and guests in SAMPL5 - Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des., 2017

Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge.
J. Comput. Aided Mol. Des., 2017

GalaxyDock BP2 score: a hybrid scoring function for accurate protein-ligand docking.
J. Comput. Aided Mol. Des., 2017

2016
Galaxy7TM: flexible GPCR-ligand docking by structure refinement.
Nucleic Acids Res., 2016

Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.
J. Chem. Inf. Model., 2016

2015
GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.
Nucleic Acids Res., 2015

2014
GalaxySite: ligand-binding-site prediction by using molecular docking.
Nucleic Acids Res., 2014

2013
GalaxyRefine: protein structure refinement driven by side-chain repacking.
Nucleic Acids Res., 2013

GalaxyDock2: Protein-ligand docking using beta-complex and global optimization.
J. Comput. Chem., 2013

GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.
Bioinform., 2013

2012
GalaxyWEB server for protein structure prediction and refinement.
Nucleic Acids Res., 2012

GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-chains.
J. Chem. Inf. Model., 2012

GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.
BMC Bioinform., 2012

2011
The FALC-Loop web server for protein loop modeling.
Nucleic Acids Res., 2011

LigDockCSA: Protein-ligand docking using conformational space annealing.
J. Comput. Chem., 2011

2005
Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller.
J. Comput. Chem., 2005

2004
A kinematic view of loop closure.
J. Comput. Chem., 2004

Using quaternions to calculate RMSD.
J. Comput. Chem., 2004

2003
MOPED: Method for optimizing physical energy parameters using decoys.
J. Comput. Chem., 2003


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