Céline Scornavacca

According to our database, Céline Scornavacca authored at least 62 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A Rigorous Framework to Classify the Postduplication Fate of Paralogous Genes.

Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca

J. Comput. Biol., 2024

Maximizing Network Phylogenetic Diversity.

Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller

CoRR, 2024

2023

Classifying the Post-duplication Fate of Paralogous Genes.

Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca

Proceedings of the Comparative Genomics - 20th International Conference, 2023

2022

NetRAX: accurate and fast maximum likelihood phylogenetic network inference.

Sarah Lutteropp, Céline Scornavacca, Alexey M. Kozlov, Benoit Morel, Alexandros Stamatakis

Bioinform., 2022

Treewidth-based algorithms for the small parsimony problem on networks.

Céline Scornavacca, Mathias Weller

Algorithms Mol. Biol., 2022

2021

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.

Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2021

2020

Generation of Level-<i>k</i>k LGT Networks.

Joan Carles Pons, Céline Scornavacca, Gabriel Cardona

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Computing the probability of gene trees concordant with the species tree in the multispecies coalescent.

Jakub Truszkowski, Céline Scornavacca, Fabio Pardi

CoRR, 2020

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons

Bioinform., 2020

Scanning Phylogenetic Networks Is NP-hard.

Vincent Berry, Céline Scornavacca, Mathias Weller

Proceedings of the SOFSEM 2020: Theory and Practice of Computer Science, 2020

2019

On the Weighted Quartet Consensus problem.

Manuel Lafond, Céline Scornavacca

Theor. Comput. Sci., 2019

Correction: Generation of Binary Tree-Child phylogenetic networks.

Gabriel Cardona, Joan Carles Pons, Céline Scornavacca

PLoS Comput. Biol., 2019

Generation of Binary Tree-Child phylogenetic networks.

Gabriel Cardona, Joan Carles Pons, Céline Scornavacca

PLoS Comput. Biol., 2019

Cutting an alignment with Ockham's razor.

Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca

CoRR, 2019

Generation of Tree-Child phylogenetic networks.

Gabriel Cardona, Joan Carles Pons, Céline Scornavacca

CoRR, 2019

Reconciling multiple genes trees via segmental duplications and losses.

Riccardo Dondi, Manuel Lafond, Céline Scornavacca

Algorithms Mol. Biol., 2019

An O(n log n) Time Algorithm for Computing the Path-Length Distance Between Trees.

David Bryant, Céline Scornavacca

Algorithmica, 2019

2018

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

Matija Brozovic, Christelle Dantec, Justine Dardaillon, Delphine Dauga, Emmanuel Faure, Mathieu Gineste, Alexandra Louis, Magali Naville, Kazuhiro R. Nitta, Jacques Piette, Wendy Reeves, Céline Scornavacca, Paul Simion, Renaud Vincentelli, Maelle Bellec, Sameh Ben Aicha, Marie Fagotto, Marion Guéroult-Bellone, Maximilian Haeussler, Edwin Jacox, Elijah K. Lowe, Mickaël Mendez, Alexis Roberge, Alberto Stolfi, Rui Yokomori, C. Titus Brown, Christian Cambillau, Lionel A. Christiaen, Frédéric Delsuc, Emmanuel J. P. Douzery, Rémi Dumollard, Takehiro Kusakabe, Kenta Nakai, Hiroki Nishida, Yutaka Satou, Billie J. Swalla, Michael Veeman, Jean-Nicolas Volff, Patrick Lemaire

Nucleic Acids Res., 2018

RecPhyloXML: a format for reconciled gene trees.

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin

Bioinform., 2018

2017

A Resolution of the Static Formulation Question for the Problem of Computing the History Bound.

Julia Matsieva, Steven Kelk, Céline Scornavacca, Chris Whidden, Dan Gusfield

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Rearrangement moves on rooted phylogenetic networks.

Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2017

Exploring the tiers of rooted phylogenetic network space using tail moves.

Remie Janssen, Mark Jones, Péter L. Erdös, Leo van Iersel, Céline Scornavacca

CoRR, 2017

Finding the most parsimonious or likely tree in a network with respect to an alignment.

Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel

CoRR, 2017

Consistency of orthology and paralogy constraints in the presence of gene transfers.

Mark Jones, Manuel Lafond, Céline Scornavacca

CoRR, 2017

Constructing a Consensus Phylogeny from a Leaf-Removal Distance.

Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller

CoRR, 2017

Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.

Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca

Bioinform., 2017

Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets.

Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu

Algorithmica, 2017

Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract).

Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller

Proceedings of the String Processing and Information Retrieval, 2017

2016

ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.

Matija Brozovic, Cyril Martin, Christelle Dantec, Delphine Dauga, Mickaël Mendez, Paul Simion, Madeline Percher, Baptiste Laporte, Céline Scornavacca, Anna Di Gregorio, Shigeki Fujiwara, Mathieu Gineste, Elijah K. Lowe, Jacques Piette, Claudia Racioppi, Filomena Ristoratore, Yasunori Sasakura, Naohito Takatori, C. Titus Brown, Frédéric Delsuc, Emmanuel J. P. Douzery, Carmela Gissi, Alex McDougall, Hiroki Nishida, Hitoshi Sawada, Billie J. Swalla, Hitoyoshi Yasuo, Patrick Lemaire

Nucleic Acids Res., 2016

Phylogenetic incongruence through the lens of Monadic Second Order logic.

Steven Kelk, Leo van Iersel, Céline Scornavacca, Mathias Weller

J. Graph Algorithms Appl., 2016

Kernelizations for the hybridization number problem on multiple nonbinary trees.

Leo van Iersel, Steven Kelk, Céline Scornavacca

J. Comput. Syst. Sci., 2016

Do branch lengths help to locate a tree in a phylogenetic network?

Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca

CoRR, 2016

On the consistency of orthology relationships.

Mark Jones, Christophe Paul, Céline Scornavacca

BMC Bioinform., 2016

Fast and accurate branch lengths estimation for phylogenomic trees.

Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi

BMC Bioinform., 2016

ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.

Edwin Jacox, Cédric Chauve, Gergely J. Szöllosi, Yann Ponty, Céline Scornavacca

Bioinform., 2016

SylvX: a viewer for phylogenetic tree reconciliations.

François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry

Bioinform., 2016

Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees.

Julien Baste, Christophe Paul, Ignasi Sau, Céline Scornavacca

Proceedings of the Algorithmic Aspects in Information and Management, 2016

2015

On Computing the Maximum Parsimony Score of a Phylogenetic Network.

Mareike Fischer, Leo van Iersel, Steven Kelk, Céline Scornavacca

SIAM J. Discret. Math., 2015

Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable.

Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2015

Phylogenetic incongruence through the lens of Monadic Second Order logic.

Steven Kelk, Leo van Iersel, Céline Scornavacca

CoRR, 2015

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality.

Thu-Hien To, Edwin Jacox, Vincent Ranwez, Céline Scornavacca

BMC Bioinform., 2015

Joint amalgamation of most parsimonious reconciled gene trees.

Céline Scornavacca, Edwin Jacox, Gergely J. Szöllosi

Bioinform., 2015

2014

The agreement problem for unrooted phylogenetic trees is FPT.

Céline Scornavacca, Leo van Iersel, Steven Kelk, David Bryant

J. Graph Algorithms Appl., 2014

A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees.

Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca

BMC Bioinform., 2014

Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable.

Steven Kelk, Céline Scornavacca

Algorithmica, 2014

2013

Representing a Set of Reconciliations in a Compact Way.

Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez

J. Bioinform. Comput. Biol., 2013

Reconciliation-based detection of co-evolving gene families.

Yao-ban Chan, Vincent Ranwez, Céline Scornavacca

BMC Bioinform., 2013

2012

On the Elusiveness of Clusters.

Steven Kelk, Céline Scornavacca, Leo van Iersel

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set.

Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie

SIAM J. Discret. Math., 2012

A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees.

Céline Scornavacca, Simone Linz, Benjamin Albrecht

J. Comput. Biol., 2012

Towards the fixed parameter tractability of constructing minimal phylogenetic networks from arbitrary sets of nonbinary trees

Steven Kelk, Céline Scornavacca

CoRR, 2012

Fast computation of minimum hybridization networks.

Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson

Bioinform., 2012

A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number.

Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Building species trees from larger parts of phylogenomic databases.

Céline Scornavacca, Vincent Berry, Vincent Ranwez

Inf. Comput., 2011

Tanglegrams for rooted phylogenetic trees and networks.

Céline Scornavacca, Franziska Zickmann, Daniel H. Huson

Bioinform., 2011

2010

An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers.

Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry

Proceedings of the Comparative Genomics - International Workshop, 2010

Phylogenetic Networks - Concepts, Algorithms and Applications.

Daniel H. Huson, Regula Rupp, Céline Scornavacca

Cambridge University Press, ISBN: 978-0-521-75596-2, 2010

2009

Supertree methods for phylogenomics. (Méthodes de superarbres pour la phylogénomique).

Céline Scornavacca

PhD thesis, 2009

From Gene Trees to Species Trees through a Supertree Approach.

Céline Scornavacca, Vincent Berry, Vincent Ranwez

Proceedings of the Language and Automata Theory and Applications, 2009

2008

Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

PhySIC_IST: cleaning source trees to infer more informative supertrees.

Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez

BMC Bioinform., 2008

2007

The Solution Space of Sorting by Reversals.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007