Catherine A. Ball

According to our database, Catherine A. Ball authored at least 21 papers between 1998 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Ancestry inference using reference labeled clusters of haplotypes.

Yong Wang, Shiya Song, Joshua G. Schraiber, Alisa Sedghifar, Jake K. Byrnes, David A. Turissini, Eurie L. Hong, Catherine A. Ball, Keith Noto

BMC Bioinform., 2021

2014

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

James C. Hu, Gavin Sherlock, Deborah A. Siegele, Suzanne A. Aleksander, Catherine A. Ball, Janos Demeter, Sushanth Gouni, Timothy A. Holland, Peter D. Karp, John E. Lewis, Nathan M. Liles, Brenley K. McIntosh, Huaiyu Mi, Anushya Muruganujan, Farrell Wymore, Paul D. Thomas

Nucleic Acids Res., 2014

2010

Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.

Ravi Shankar, Helen E. Parkinson, Tony Burdett, Emma Hastings, Junmin Liu, Michael Miller, Rashmi Srinivasa, Joseph White, Alvis Brazma, Gavin Sherlock, Christian J. Stoeckert Jr., Catherine A. Ball

Bioinform., 2010

2009

TB database: an integrated platform for tuberculosis research.

T. B. K. Reddy, Robert Riley, Farrell Wymore, Phillip Montgomery, David DeCaprio, Reinhard Engels, Marcel Gellesch, Jeremy Hubble, Dennis Jen, Heng Jin, Michael Koehrsen, Lisa Larson, Maria Mao, Michael Nitzberg, Peter Sisk, Christian Stolte, Brian Weiner, Jared White, Zachariah K. Zachariah, Gavin Sherlock, James E. Galagan, Catherine A. Ball, Gary K. Schoolnik

Nucleic Acids Res., 2009

Implementation of GenePattern within the Stanford Microarray Database.

Jeremy Hubble, Janos Demeter, Heng Jin, Maria Mao, Michael Nitzberg, T. B. K. Reddy, Farrell Wymore, Zachariah K. Zachariah, Gavin Sherlock, Catherine A. Ball

Nucleic Acids Res., 2009

2008

Domain-Specific Data Sharing in Neuroscience: What Do We Have to Learn from Each Other?

John Darrell Van Horn, Catherine A. Ball

Neuroinformatics, 2008

The Stanford Tissue Microarray Database.

Robert J. Marinelli, Kelli Montgomery, Chih Long Liu, Nigam H. Shah, Wijan Prapong, Michael Nitzberg, Zachariah K. Zachariah, Gavin Sherlock, Yasodha Natkunam, Robert B. West, Matt van de Rijn, Patrick O. Brown, Catherine A. Ball

Nucleic Acids Res., 2008

The XBabelPhish MAGE-ML and XML Translator.

Donald Maier, Farrell Wymore, Gavin Sherlock, Catherine A. Ball

BMC Bioinform., 2008

2007

The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

Janos Demeter, Catherine Beauheim, Jeremy Gollub, Tina Hernandez-Boussard, Heng Jin, Donald Maier, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock, Catherine A. Ball

Nucleic Acids Res., 2007

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

Catherine Beauheim, Farrell Wymore, Michael Nitzberg, Zachariah K. Zachariah, Heng Jin, Jesse H. Pate Skene, Catherine A. Ball, Gavin Sherlock

BMC Bioinform., 2007

2006

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma

BMC Bioinform., 2006

2005

The Stanford Microarray Database accommodates additional microarray platforms and data formats.

Catherine A. Ball, Ihab A. B. Awad, Janos Demeter, Jeremy Gollub, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock

Nucleic Acids Res., 2005

2004

Caryoscope: An Open Source Java application for viewing microarray data in a genomic context.

Ihab A. B. Awad, Christian A. Rees, Tina Hernandez-Boussard, Catherine A. Ball, Gavin Sherlock

BMC Bioinform., 2004

2003

The Stanford Microarray Database: data access and quality assessment tools.

Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, Gavin Sherlock

Nucleic Acids Res., 2003

2002

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2002

An open letter to the scientific journals.

Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank C. P. Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald C. Taylor, Alvis Brazma, John Quackenbush

Bioinform., 2002

2001

The Stanford Microarray Database.

Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2001

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Catherine A. Ball, Heng Jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2001

2000

Integrating functional genomic information into the Saccharomyces Genome Database.

Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2000

1999

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Gail Juvik, Alice Malekian, Shannon Roberts, TaiYun Roe, Charles R. Scafe, Mark Schroeder, Gavin Sherlock, Shuai Weng, Yan Zhu, J. Michael Cherry, David Botstein

Nucleic Acids Res., 1999

1998

SGD: Saccharomyces Genome Database.

J. Michael Cherry, Caroline Adler, Catherine A. Ball, Stephen A. Chervitz, Selina S. Dwight, Erich T. Hester, Yankai Jia, Gail Juvik, TaiYun Roe, Mark Schroeder, Shuai Weng, David Botstein

Nucleic Acids Res., 1998