Catharina Olsen

According to our database, Catharina Olsen authored at least 13 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Combining evolution and protein language models for an interpretable cancer driver mutation prediction with D2Deep.

Konstantina Tzavella, Adrián Díaz, Catharina Olsen, Wim F. Vranken

Briefings Bioinform., 2024

2023

A workflow to study mechanistic indicators for driver gene prediction with Moonlight.

Mona Nourbakhsh, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo

Briefings Bioinform., September, 2023

EDIR: exome database of interspersed repeats.

Laura D. T. Vo Ngoc, Randy Osei, Katrin Dohr, Catharina Olsen, Sara Seneca, Alexander Gheldof

Bioinform., January, 2023

2019

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.

Mohamed Mounir, Marta Lucchetta, Tiago Chedraoui Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo

PLoS Comput. Biol., 2019

2018

TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data.

Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr

F1000Research, 2018

2016

<i>TCGA Workflow</i>: Analyze cancer genomics and epigenomics data using Bioconductor packages.

Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Fulvio D'Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr

F1000Research, 2016

PharmacoGx: an R package for analysis of large pharmacogenomic datasets.

Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains

Bioinform., 2016

2015

NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference.

Pau Bellot, Catharina Olsen, Philippe Salembier, Albert Oliveras-Vergés, Patrick E. Meyer

BMC Bioinform., 2015

2013

Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity.

Simon Papillon-Cavanagh, Nicolas De Jay, Nehme Hachem, Catharina Olsen, Gianluca Bontempi, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains

J. Am. Medical Informatics Assoc., 2013

mRMRe: an R package for parallelized mRMR ensemble feature selection.

Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Nehme Hachem, Gianluca Bontempi, Benjamin Haibe-Kains

Bioinform., 2013

2012

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.

Benjamin Haibe-Kains, Catharina Olsen, Amira Djebbari, Gianluca Bontempi, Mick Correll, Christopher Bouton, John Quackenbush

Nucleic Acids Res., 2012

2011

Fourier spectral factor model for prediction of multidimensional signals.

Abhilash Alexander Miranda, Catharina Olsen, Gianluca Bontempi

Signal Process., 2011

2009

On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information.

Catharina Olsen, Patrick E. Meyer, Gianluca Bontempi

EURASIP J. Bioinform. Syst. Biol., 2009