Cathal Seoighe

According to our database, Cathal Seoighe authored at least 18 papers between 1997 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization.

Samuel Rosean, Eric A. Sosa, Donal F. O'Shea, Srilakshmi M. Raj, Cathal Seoighe, John M. Greally

BMC Bioinform., December, 2024

Performance assessment of computational tools to detect microsatellite instability.

Harrison Anthony, Cathal Seoighe

Briefings Bioinform., 2024

2022

Random-effects meta-analysis of effect sizes as a unified framework for gene set analysis.

Mohammad A. Makrooni, Donal O'Shea, Paul Geeleher, Cathal Seoighe

PLoS Comput. Biol., October, 2022

2016

Consistency in large pharmacogenomic studies.

Paul Geeleher, Eric R. Gamazon, Cathal Seoighe, Nancy J. Cox, Rong Stephanie Huang

Nat., 2016

2015

Seq-ing improved gene expression estimates from microarrays using machine learning.

Paul K. Korir, Paul Geeleher, Cathal Seoighe

BMC Bioinform., 2015

Promiscuous mRNA splicing under the control of AIRE in medullary thymic epithelial cells.

Peter Keane, Rhodri Ceredig, Cathal Seoighe

Bioinform., 2015

2013

Gene-set analysis is severely biased when applied to genome-wide methylation data.

Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe

Bioinform., 2013

CellMix: a comprehensive toolbox for gene expression deconvolution.

Renaud Gaujoux, Cathal Seoighe

Bioinform., 2013

2011

Evidence for intron length conservation in a set of mammalian genes associated with embryonic development.

Cathal Seoighe, Paul K. Korir

BMC Bioinform., 2011

Investigating the effect of paralogs on microarray gene-set analysis.

Andre J. Faure, Cathal Seoighe, Nicola J. Mulder

BMC Bioinform., 2011

2010

A flexible R package for nonnegative matrix factorization.

Renaud Gaujoux, Cathal Seoighe

BMC Bioinform., 2010

2009

Models of coding sequence evolution.

Wayne Delport, Konrad Scheffler, Cathal Seoighe

Briefings Bioinform., 2009

2008

MScanner: a classifier for retrieving Medline citations.

Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe

BMC Bioinform., 2008

2006

Maximum likelihood inference of imprinting and allele-specific expression from EST data.

Cathal Seoighe, Victoria Nembaware, Konrad Scheffler

Bioinform., 2006

Robust inference of positive selection from recombining coding sequences.

Konrad Scheffler, Darren P. Martin, Cathal Seoighe

Bioinform., 2006

2005

Very Low Power to Detect Asymmetric Divergence of Duplicated Genes.

Cathal Seoighe, Konrad Scheffler

Proceedings of the Comparative Genomics, 2005

2004

FRAGS: estimation of coding sequence substitution rates from fragmentary data.

Estienne C. Swart, Winston A. Hide, Cathal Seoighe

BMC Bioinform., 2004

1997

Genome duplication and the evolution of gene Order and chromosome number in yeast.

Cathal Seoighe, Denis C. Shields, Kenneth H. Wolfe

Proceedings of the German Conference on Bioinformatics, 1997