Carson M. Andorf

According to our database, Carson M. Andorf authored at least 22 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

PanEffect: a pan-genome visualization tool for variant effects in maize.

Carson M. Andorf, Olivia C. Haley, Rita K. Hayford, John L. Portwood II, Stephen Harding, Shatabdi Sen, Ethalinda K. S. Cannon, Jack M. Gardiner, Hye-Seon Kim, Margaret Woodhouse

Bioinform., February, 2024

2023

Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications.

Shatabdi Sen, Margaret Woodhouse, John L. Portwood II, Carson M. Andorf

Database J. Biol. Databases Curation, 2023

2022

Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach.

Kyoung Tak Cho, Taner Z. Sen, Carson M. Andorf

Frontiers Artif. Intell., 2022

2021

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Sagnik Banerjee, Priyanka Bhandary, Margaret Woodhouse, Taner Z. Sen, Roger P. Wise, Carson M. Andorf

BMC Bioinform., 2021

qTeller: a tool for comparative multi-genomic gene expression analysis.

Margaret Woodhouse, Shatabdi Sen, David A. Schott, John L. Portwood II, Michael Freeling, Justin W. Walley, Carson M. Andorf, James C. Schnable

Bioinform., 2021

2020

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data.

Sagnik Banerjee, Margaret Woodhouse, Roger P. Wise, Priyanka Bhandary, Taner Z. Sen, Carson M. Andorf

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019

MaizeGDB 2018: the maize multi-genome genetics and genomics database.

John L. Portwood II, Margaret Woodhouse, Ethalinda K. S. Cannon, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Jesse R. Walsh, Taner Z. Sen, Kyoung Tak Cho, David A. Schott, Bremen L. Braun, Miranda Dietze, Brittney Dunfee, Christine G. Elsik, Nancy Manchanda, Ed Coe, Marty Sachs, Philip Stinard, Josh Tolbert, Shane Zimmerman, Carson M. Andorf

Nucleic Acids Res., 2019

PedigreeNet: a web-based pedigree viewer for biological databases.

Bremen L. Braun, David A. Schott, John L. Portwood II, Carson M. Andorf, Taner Z. Sen

Bioinform., 2019

2018

Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning.

Naihui Zhou, Zachary D. Siegel, Scott Zarecor, Nigel Lee, Darwin A. Campbell, Carson M. Andorf, Dan Nettleton, Carolyn J. Lawrence-Dill, Baskar Ganapathysubramanian, Jonathan W. Kelly, Iddo Friedberg

PLoS Comput. Biol., 2018

SNPversity: a web-based tool for visualizing diversity.

David A. Schott, Abhinav G. Vinnakota, John L. Portwood II, Carson M. Andorf, Taner Z. Sen

Database J. Biol. Databases Curation, 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main

Database J. Biol. Databases Curation, 2018

2017

Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.

Taner Z. Sen, Bremen L. Braun, David A. Schott, John L. Portwood II, Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Ethalinda K. S. Cannon, Carson M. Andorf

Database J. Biol. Databases Curation, 2017

2016

MaizeGDB update: new tools, data and interface for the maize model organism database.

Carson M. Andorf, Ethalinda K. S. Cannon, John L. Portwood II, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Bremen L. Braun, Darwin A. Campbell, Abhinav G. Vinnakota, Venktanaga V. Sribalusu, Miranda Huerta, Kyoung Tak Cho, Kokulapalan Wimalanathan, Jacqueline D. Richter, Emily D. Mauch, Bhavani S. Rao, Scott M. Birkett, Taner Z. Sen, Carolyn J. Lawrence-Dill

Nucleic Acids Res., 2016

2011

MaizeGDB: curation and outreach go hand-in-hand.

Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Taner Z. Sen, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2011

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video.

Lisa C. Harper, Mary L. Schaeffer, Jordan Thistle, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Bremen L. Braun, Scott M. Birkett, Carolyn J. Lawrence, Taner Z. Sen

Database J. Biol. Databases Curation, 2011

2010

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.

Carson M. Andorf, Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Darwin A. Campbell, Taner Z. Sen

Bioinform., 2010

Choosing a genome browser for a Model Organism Database: surveying the Maize community.

Taner Z. Sen, Lisa C. Harper, Mary L. Schaeffer, Carson M. Andorf, Trent E. Seigfried, Darwin A. Campbell, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2010

2009

MaizeGDB becomes 'sequence-centric'.

Taner Z. Sen, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon, Darwin A. Campbell, Carolyn J. Lawrence

Database J. Biol. Databases Curation, 2009

2007

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.

Carson M. Andorf, Drena Dobbs, Vasant G. Honavar

BMC Bioinform., 2007

2005

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources.

Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar

Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

Information Integration from Semantically Heterogeneous Biological Data Sources.

Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar

Proceedings of the 16th International Workshop on Database and Expert Systems Applications (DEXA 2005), 2005

2002

Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences.

Carson M. Andorf, Drena Dobbs, Vasant G. Honavar

Proceedings of the 6th Joint Conference on Information Science, 2002