Carol Lushbough

According to our database, Carol Lushbough authored at least 25 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Comparative Study of Domain Driven Terms Extraction Using Large Language Models.

Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba

CoRR, 2024

2023

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation.

Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model.

Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set.

Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Ten simple rules to cultivate transdisciplinary collaboration in data science.

Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Lee Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant

PLoS Comput. Biol., 2021

Prediction of essential genes in G20 using machine learning model.

Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh Kumar Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2017

Bio-TDS: bioscience query tool discovery system.

Etienne Z. Gnimpieba, Menno S. VanDiermen, Shayla M. Gustafson, Bill Conn, Carol M. Lushbough

Nucleic Acids Res., 2017

2015

A genome-wide association study platform built on iPlant cyber-infrastructure.

Liya Wang, Doreen Ware, Carol Lushbough, Nirav C. Merchant, Lincoln Stein

Concurr. Comput. Pract. Exp., 2015

Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure.

Carol M. Lushbough, Etienne Z. Gnimpieba, Rion Dooley

Concurr. Comput. Pract. Exp., 2015

SBMLDock: Docker Driven Systems Biology Tool Development and Usage.

Etienne Z. Gnimpieba, Mathialakan Thavappiragasam, Abalo Chango, Bill Conn, Carol M. Lushbough

Proceedings of the Computational Methods in Systems Biology, 2015

2014

Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison.

Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Automatic biosystems comparison using semantic and name similarity.

Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Heuristic parallelizable algorithm for similarity based biosystems comparison.

Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative.

Etienne Z. Gnimpieba, Abalo Chango, Carol M. Lushbough

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches.

Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough

CoRR, 2013

Building an open Genome Wide Association Study (GWAS) platform.

Liya Wang, Doreen Ware, Nirav C. Merchant, Carol Lushbough

Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013

BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources.

Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley

Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013

2011

The BioExtract Server: a web-based bioinformatic workflow platform.

Carol Lushbough, Douglas M. Jennewein, Volker Brendel

Nucleic Acids Res., 2011

2010

BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2008

PlantGDB: a resource for comparative plant genomics.

Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel

Nucleic Acids Res., 2008

Implementing bioinformatic workflows within the BioExtract Server.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

Int. J. Comput. Biol. Drug Des., 2008

TableMaker: An ad hoc Query Tool for Relational Databases.

Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis.

Carol Lushbough, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007

Creating Bioinformatic Workflows within the BioExtract Server.

Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

Providing Application Services for Small Businesses.

Carol Lushbough

Proceedings of the 2006 International Conference on Frontiers in Education: Computer Science & Computer Engineering, 2006