Critical grid method: An extensible Smoothed Particle Hydrodynamics fluid general interpolation method for Fluid-Structure Interaction surface coupling based on preCICE.

[BibT_eX]

[DOI]

Sifan Long

Xiaowei Guo

Xiaokang Fan

Canqun Yang

CoRR, 2024

A Motion Trace Decomposition-based overset grid method for parallel CFD simulations with moving boundaries.

[BibT_eX]

[DOI]

Proceedings of the 53rd International Conference on Parallel Processing, 2024

VLASPH: Smoothed Particle Hydrodynamics on VLA SIMD Architectures.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2024: Parallel Processing, 2024

2023

A large scale parallel fluid-structure interaction computing platform for simulating structural responses to a detonation shock.

[BibT_eX]

[DOI]

Softw. Pract. Exp., 2023

Free energy perturbation-based large-scale virtual screening for effective drug discovery against COVID-19.

[BibT_eX]

[DOI]

Int. J. High Perform. Comput. Appl., 2023

An Improved Parallel Overset Grid Method for Fluid Simulation with Moving Boundary.

[BibT_eX]

[DOI]

Proceedings of the 52nd International Conference on Parallel Processing, 2023

BioNet+: A Comprehensive Interaction Model of Finding Therapeutics for Diseases with Graph Deep Learning.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on High Performance Computing & Communications, 2023

The Optimization of Multi-physics Application Simulated by Lattice Boltzmann Method Based on Domestic Processors.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Networks, 2023

Accelerating Type Confusion Detection by Identifying Harmless Type Castings.

[BibT_eX]

[DOI]

Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

DrugProtKGE: Weakly Supervised Knowledge Graph Embedding for Highly-Effective Drug-Protein Interaction Representation.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

VecDualSPHysics: A vectorized implementation of Smoothed Particle Hydrodynamics method for simulating fluid flows on multi-core processors.

[BibT_eX]

[DOI]

J. Comput. Phys., 2022

ParaCopasi: A package for parallel biochemical simulation and analysis.

[BibT_eX]

[DOI]

J. Comput. Chem., 2022

Private and Shared Feature Extractors Based on Hierarchical Neighbor Encoder for Adaptive Few-Shot Knowledge Graph Completion.

[BibT_eX]

[DOI]

Canqun Yang

Weiwen Zhang

Proceedings of the 34th IEEE International Conference on Tools with Artificial Intelligence, 2022

ParallelDualSPHysics: supporting efficient parallel fluid simulations through MPI-enabled SPH method.

[BibT_eX]

[DOI]

Proceedings of the 51st International Conference on Parallel Processing, 2022

Stgat-Mad : Spatial-Temporal Graph Attention Network For Multivariate Time Series Anomaly Detection.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Acoustics, 2022

2021

BALS: Blocked Alternating Least Squares for Parallel Sparse Matrix Factorization on GPUs.

[BibT_eX]

[DOI]

IEEE Trans. Parallel Distributed Syst., 2021

Mining microbe-disease interactions from literature via a transfer learning model.

[BibT_eX]

[DOI]

BMC Bioinform., 2021

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments.

[BibT_eX]

[DOI]

BMC Bioinform., 2021

CNN+LSTM Accelerated Turbulent Flow Simulation with Link-Wise Artificial Compressibility Method.

[BibT_eX]

[DOI]

Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021

Drug-drug interaction extraction from biomedical texts based on multi-attention mechanism.

[BibT_eX]

[DOI]

Proceedings of the ICBRA 2021: 2021 8th International Conference on Bioinformatics Research and Applications, Berlin Germany, September 11, 2021

Large-Scale Parallel Alignment Algorithm for SMRT Reads.

[BibT_eX]

[DOI]

Proceedings of the Algorithms and Architectures for Parallel Processing, 2021

2020

Optimizing Streaming Parallelism on Heterogeneous Many-Core Architectures.

[BibT_eX]

[DOI]

IEEE Trans. Parallel Distributed Syst., 2020

High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Correlation maximization machine for multi-modalities multiclass classification.

[BibT_eX]

[DOI]

Canqun Yang

Naiyang Guan

Pattern Anal. Appl., 2020

clMF: A fine-grained and portable alternating least squares algorithm for parallel matrix factorization.

[BibT_eX]

[DOI]

Future Gener. Comput. Syst., 2020

Optimizing Streaming Parallelism on Heterogeneous Many-Core Architectures: A Machine Learning Based Approach.

[BibT_eX]

[DOI]

CoRR, 2020

CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph.

[BibT_eX]

[DOI]

BMC Bioinform., 2020

Segment Medical Image Using U-Net Combining Recurrent Residuals and Attention.

[BibT_eX]

[DOI]

Proceedings of 2020 International Conference on Medical Imaging and Computer-Aided Diagnosis, 2020

Numerical Study of Fluid-Structure Interaction Dynamics under High-explosive Detonation on Massively Parallel Computers.

[BibT_eX]

[DOI]

Proceedings of the 22nd IEEE International Conference on High Performance Computing and Communications; 18th IEEE International Conference on Smart City; 6th IEEE International Conference on Data Science and Systems, 2020

Improving performance for simulating complex fluids on massively parallel computers by component loop-unrolling and communication hiding.

[BibT_eX]

[DOI]

2019

Application-aware NoC management in GPUs multitasking.

[BibT_eX]

[DOI]

J. Supercomput., 2019

Toward fault-tolerant hybrid programming over large-scale heterogeneous clusters via checkpointing/restart optimization.

[BibT_eX]

[DOI]

J. Supercomput., 2019

SCP: Shared Cache Partitioning for High-Performance GEMM.

[BibT_eX]

[DOI]

ACM Trans. Archit. Code Optim., 2019

Low-Cost Image Compressive Sensing with Multiple Measurement Rates for Object Detection.

[BibT_eX]

[DOI]

Sensors, 2019

GARDENIA: A Graph Processing Benchmark Suite for Next-Generation Accelerators.

[BibT_eX]

[DOI]

ACM J. Emerg. Technol. Comput. Syst., 2019

Reverse Offload Programming on Heterogeneous Systems.

[BibT_eX]

[DOI]

IEEE Access, 2019

The Communication-Overlapped Hybrid Decomposition Parallel Algorithm for Multi-Scale Fluid Simulations.

[BibT_eX]

[DOI]

Proceedings of the 48th International Conference on Parallel Processing, 2019

A Lightweight Collective Communication Based Parallel Algorithm for the Greedy Point Selection in RBF Mesh Deformation.

[BibT_eX]

[DOI]

Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019

APOAL: An Adaptive Parallel Optimization Algorithm for LBM Fluid Simulations.

[BibT_eX]

[DOI]

2018

Orchestrating parallel detection of strongly connected components on GPUs.

[BibT_eX]

[DOI]

Parallel Comput., 2018

Moving from exascale to zettascale computing: challenges and techniques.

[BibT_eX]

[DOI]

Frontiers Inf. Technol. Electron. Eng., 2018

A hybrid deep learning CNN-ELM for age and gender classification.

[BibT_eX]

[DOI]

Neurocomputing, 2018

Tuning Streamed Applications on Intel Xeon Phi: A Machine Learning Based Approach.

[BibT_eX]

[DOI]

CoRR, 2018

Collaborative Subspace Graph Hashing for Cross-modal Retrieval.

[BibT_eX]

[DOI]

Proceedings of the 2018 ACM on International Conference on Multimedia Retrieval, 2018

Auto-tuning Streamed Applications on Intel Xeon Phi.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018

UHCL-Darknet: An OpenCL-based Deep Neural Network Framework for Heterogeneous Multi-/Many-core Clusters.

[BibT_eX]

[DOI]

Proceedings of the 47th International Conference on Parallel Processing, 2018

MOCL: an efficient openCL implementation for the matrix-2000 architecture.

[BibT_eX]

[DOI]

Proceedings of the 15th ACM International Conference on Computing Frontiers, 2018

2017

多核/众核平台上推荐算法的实现与性能评估 (Implementation and Performance Evaluation of Recommender Algorithms Based on Multi-/Many-core Platforms).

[BibT_eX]

[DOI]

计算机科学, 2017

面向存储层次设计优化的GPU程序性能分析 (Performance Analysis of GPU Programs Towards Better Memory Hierarchy Design).

[BibT_eX]

[DOI]

计算机科学, 2017

GARDENIA: A Domain-specific Benchmark Suite for Next-generation Accelerators.

[BibT_eX]

[DOI]

CoRR, 2017

Efficient and high-quality sparse graph coloring on GPUs.

[BibT_eX]

[DOI]

Concurr. Comput. Pract. Exp., 2017

LU factorization on heterogeneous systems: an energy-efficient approach towards high performance.

[BibT_eX]

[DOI]

Computing, 2017

P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool.

[BibT_eX]

[DOI]

BMC Genom., 2017

Dependency-based long short term memory network for drug-drug interaction extraction.

[BibT_eX]

[DOI]

BMC Bioinform., 2017

High Performance Detection of Strongly Connected Components in Sparse Graphs on GPUs.

[BibT_eX]

[DOI]

Proceedings of the 8th International Workshop on Programming Models and Applications for Multicores and Manycores, 2017

Projective Hard Thresholding Pursuit for Nonnegative Sparse Recovery.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Symposium on Parallel and Distributed Processing with Applications and 2017 IEEE International Conference on Ubiquitous Computing and Communications (ISPA/IUCC), 2017

Delay Compensated Asynchronous Adam Algorithm for Deep Neural Networks.

[BibT_eX]

[DOI]

Implementing and Evaluating OpenCL on an ARMv8 Multi-Core CPU.

[BibT_eX]

[DOI]

Efficient and Portable ALS Matrix Factorization for Recommender Systems.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Heterogeneous acceleration for CNN training with many integrated core.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Signal Processing, 2017

Automatic density clustering with multiple kernels for high-dimension bioinformatics data.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

Evaluating Multiple Streams on Heterogeneous Platforms.

[BibT_eX]

[DOI]

Parallel Process. Lett., 2016

623 Tflop/s HPCG run on Tianhe-2: Leveraging millions of hybrid cores.

[BibT_eX]

[DOI]

Int. J. High Perform. Comput. Appl., 2016

Efficient and High-quality Sparse Graph Coloring on the GPU.

[BibT_eX]

[DOI]

Xuhao Chen

Pingfan Li

Canqun Yang

CoRR, 2016

Accurate, validated and fast evaluation of elementary symmetric functions and its application.

[BibT_eX]

[DOI]

Appl. Math. Comput., 2016

Bilateral Sampling Randomized Singular Value Decomposition.

[BibT_eX]

[DOI]

Proceedings of the 17th International Conference on Parallel and Distributed Computing, 2016

Accurate Evaluation of Bivariate Polynomials.

[BibT_eX]

[DOI]

Proceedings of the 17th International Conference on Parallel and Distributed Computing, 2016

Accelerator-Centered Programming on Heterogeneous Systems.

[BibT_eX]

[DOI]

Cheng Chen

Yunfei Du

Canqun Yang

Proceedings of the 17th International Conference on Parallel and Distributed Computing, 2016

Streaming Applications on Heterogeneous Platforms.

[BibT_eX]

[DOI]

Proceedings of the Network and Parallel Computing, 2016

Monaural Speech Separation on Many Integrated Core Architecture.

[BibT_eX]

[DOI]

Proceedings of the Computer Engineering and Technology - 20th CCF Conference, 2016

Accelerating Nyström Kernel Independent Component Analysis with Many Integrated Core Architecture.

[BibT_eX]

[DOI]

Proceedings of the Computer Engineering and Technology - 20th CCF Conference, 2016

Evaluating the Performance Impact of Multiple Streams on the MIC-Based Heterogeneous Platform.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

High Performance Parallel Graph Coloring on GPGPUs.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

An Energy-Efficient Implementation of LU Factorization on Heterogeneous Systems.

[BibT_eX]

[DOI]

Proceedings of the 22nd IEEE International Conference on Parallel and Distributed Systems, 2016

mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

TI DSP C语言编译器正确性测试 (Correctness Test of TI DSP C Compiler).

[BibT_eX]

[DOI]

计算机科学, 2015

An Efficient Clique-Based Algorithm of Compute Nodes Allocation for In-memory Checkpoint System.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing - 30th International Conference, 2015

Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing - 30th International Conference, 2015

Design and Implementation of a Highly Efficient DGEMM for 64-Bit ARMv8 Multi-core Processors.

[BibT_eX]

[DOI]

Proceedings of the 44th International Conference on Parallel Processing, 2015

Implementation of an Accurate and Efficient Compensated DGEMM for 64-bit ARMv8 Multi-Core Processors.

[BibT_eX]

[DOI]

Proceedings of the 21st IEEE International Conference on Parallel and Distributed Systems, 2015

FT-Offload: A Scalable Fault-Tolerance Programing Model on MIC Cluster.

[BibT_eX]

[DOI]

Proceedings of the Algorithms and Architectures for Parallel Processing, 2015

The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

mAMBER: Accelerating Explicit Solvent Molecular Dynamic with Intel Xeon Phi Many-Integrated Core Coprocessors.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014

OpenMC: Towards Simplifying Programming for TianHe Supercomputers.

[BibT_eX]

[DOI]

J. Comput. Sci. Technol., 2014

MilkyWay-2 supercomputer: system and application.

[BibT_eX]

[DOI]

Frontiers Comput. Sci., 2014

HPCG: Preliminary Evaluation and Optimization on Tianhe-2 CPU-only Nodes.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing, 2014

2013

Exploiting hierarchy parallelism for molecular dynamics on a petascale heterogeneous system.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2013

OpenACC to Intel Offload: Automatic Translation and Optimization.

[BibT_eX]

[DOI]

Proceedings of the Computer Engineering and Technology - 17th CCF Conference, 2013

MIC acceleration of short-range molecular dynamics simulations.

[BibT_eX]

[DOI]

Proceedings of the First International Workshop on Code Optimisation for Multi and Many Cores, 2013

2012

Parallelizing SOR for GPGPUs using alternate loop tiling.

[BibT_eX]

[DOI]

Parallel Comput., 2012

A Fast Parallel Implementation of Molecular Dynamics with the Morse Potential on a Heterogeneous Petascale Supercomputer.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

2011

Optimizing Linpack Benchmark on GPU-Accelerated Petascale Supercomputer.

[BibT_eX]

[DOI]

J. Comput. Sci. Technol., 2011

2010

TH-1: China's first petaflop supercomputer.

[BibT_eX]

[DOI]

Frontiers Comput. Sci. China, 2010

Adaptive Optimization for Petascale Heterogeneous CPU/GPU Computing.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Conference on Cluster Computing, 2010

2009

Solving 2D Nonlinear Unsteady Convection-Diffusion Equations on Heterogenous Platforms with Multiple GPUs.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Conference on Parallel and Distributed Systems, 2009

GPU Acceleration of High-Speed Collision Molecular Dynamics Simulation.

[BibT_eX]

[DOI]

Proceedings of the Ninth IEEE International Conference on Computer and Information Technology, 2009

2008

Low Power Optimization for MPI Collective Operations.

[BibT_eX]

[DOI]

Proceedings of the 9th International Conference for Young Computer Scientists, 2008

Exploiting Energy Saving Opportunity of Barrier Operation in MPI Programs.

[BibT_eX]

[DOI]

Wenjing Yang

Canqun Yang

Proceedings of the Second Asia International Conference on Modelling and Simulation, 2008

OSS: Efficient Compiler Approach for Selecting Optimal Strip Size on the Imagine Stream Processor.

[BibT_eX]

[DOI]

Proceedings of the 22nd International Conference on Advanced Information Networking and Applications, 2008

2005

Improving the Performance of GCC by Exploiting IA-64 Architectural Features.

[BibT_eX]

[DOI]

Canqun Yang

Xuejun Yang

Jingling Xue

Proceedings of the Advances in Computer Systems Architecture, 10th Asia-Pacific Conference, 2005

Canqun Yang

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