Can Firtina
Orcid: 0000-0002-6548-7863
According to our database1,
Can Firtina
authored at least 27 papers
between 2016 and 2024.
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Bibliography
2024
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis.
ACM Trans. Archit. Code Optim., March, 2024
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing.
Proceedings of the 51st ACM/IEEE Annual International Symposium on Computer Architecture, 2024
2023
CoRR, 2023
MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation.
CoRR, 2023
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences.
CoRR, 2023
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes.
Bioinform., 2023
Swordfish: A Framework for Evaluating Deep Neural Network-based Basecalling using Computation-In-Memory with Non-Ideal Memristors.
Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture, 2023
Utopia: Fast and Efficient Address Translation via Hybrid Restrictive & Flexible Virtual-to-Physical Address Mappings.
Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture, 2023
Proceedings of the 60th ACM/IEEE Design Automation Conference, 2023
2022
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering.
CoRR, 2022
Utopia: Efficient Address Translation using Hybrid Virtual-to-Physical Address Mapping.
CoRR, 2022
CoRR, 2022
Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis.
CoRR, 2022
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities.
CoRR, 2022
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis.
CoRR, 2022
Bioinform., 2022
Demeter: A Fast and Energy-Efficient Food Profiler Using Hyperdimensional Computing in Memory.
IEEE Access, 2022
GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping.
Proceedings of the 55th IEEE/ACM International Symposium on Microarchitecture, 2022
GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis.
Proceedings of the IEEE Computer Society Annual Symposium on VLSI, 2022
SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping.
Proceedings of the ISCA '22: The 49th Annual International Symposium on Computer Architecture, New York, New York, USA, June 18, 2022
GenStore: a high-performance in-storage processing system for genome sequence analysis.
Proceedings of the ASPLOS '22: 27th ACM International Conference on Architectural Support for Programming Languages and Operating Systems, Lausanne, Switzerland, 28 February 2022, 2022
2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
Bioinform., 2020
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis.
Proceedings of the 53rd Annual IEEE/ACM International Symposium on Microarchitecture, 2020
2019
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes.
CoRR, 2019
2017
2016