Burkhard Rost

According to our database, Burkhard Rost authored at least 108 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., July, 2023

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.

Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P. Waman, Neeladri Sen, Burkhard Rost, Christine A. Orengo

Bioinform., January, 2023

Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling.

Ahmed Elnaggar, Hazem Essam, Wafaa Salah-Eldin, Walid Moustafa, Mohamed Elkerdawy, Charlotte Rochereau, Burkhard Rost

CoRR, 2023

2022

TMbed: transmembrane proteins predicted through language model embeddings.

Michael Bernhofer, Burkhard Rost

BMC Bioinform., December, 2022

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP).

Gabriel Foley, Ariane Mora, Connie M. Ross, Scott Bottoms, Leander Sützl, Marnie L. Lamprecht, Julian Zaugg, Alexandra Essebier, Brad Balderson, Rhys Newell, Raine E. S. Thomson, Bostjan Kobe, Ross T. Barnard, Luke Guddat, Gerhard Schenk, Jörg Carsten, Yosephine Gumulya, Burkhard Rost, Dietmar Haltrich, Volker Sieber, Elizabeth M. J. Gillam, Mikael Bodén

PLoS Comput. Biol., October, 2022

ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning.

Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost

IEEE Trans. Pattern Anal. Mach. Intell., 2022

ProteomicsDB: toward a FAIR open-source resource for life-science research.

Ludwig Lautenbacher, Patroklos Samaras, Julian Müller, Andreas Grafberger, Marwin Shraideh, Johannes Rank, Simon T. Fuchs, Tobias K. Schmidt, Matthew The, Christian Dallago, Holger Wittges, Burkhard Rost, Helmut Krcmar, Bernhard Küster, Mathias Wilhelm

Nucleic Acids Res., 2022

Nearest neighbor search on embeddings rapidly identifies distant protein relations.

Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost

Frontiers Bioinform., 2022

SETH predicts nuances of residue disorder from protein embeddings.

Dagmar Ilzhöfer, Michael Heinzinger, Burkhard Rost

Frontiers Bioinform., 2022

2021

PredictProtein - Predicting Protein Structure and Function for 29 Years.

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost

Nucleic Acids Res., 2021

CodeTrans: Towards Cracking the Language of Silicone's Code Through Self-Supervised Deep Learning and High Performance Computing.

Ahmed Elnaggar, Wei Ding, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Silvia Severini, Florian Matthes, Burkhard Rost

CoRR, 2021

Clustering FunFams using sequence embeddings improves EC purity.

Maria Littmann, Nicola Bordin, Michael Heinzinger, Konstantin Schütze, Christian Dallago, Christine A. Orengo, Burkhard Rost

Bioinform., 2021

Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.

Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman

Briefings Bioinform., 2021

2020

Validity of machine learning in biology and medicine increased through collaborations across fields of expertise.

Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna P. Ankerst, Tomer Hertz, Burkhard Rost

Nat. Mach. Intell., 2020

ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing.

Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost

CoRR, 2020

Variant effect predictions capture some aspects of deep mutational scanning experiments.

Jonas Reeb, Theresa Wirth, Burkhard Rost

BMC Bioinform., 2020

Protein-protein and protein-nucleic acid binding residues important for common and rare sequence variants in human.

Jiajun Qiu, Dmitrii Nechaev, Burkhard Rost

BMC Bioinform., 2020

2019

Secondary Structure Prediction.

Jonas Reeb, Burkhard Rost

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

FunFam protein families improve residue level molecular function prediction.

Linus Scheibenreif, Maria Littmann, Christine A. Orengo, Burkhard Rost

BMC Bioinform., 2019

Correction to: Detailed prediction of protein sub-nuclear localization.

Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost

BMC Bioinform., 2019

Detailed prediction of protein sub-nuclear localization.

Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost

BMC Bioinform., 2019

Modeling aspects of the language of life through transfer-learning protein sequences.

Michael Heinzinger, Ahmed Elnaggar, Yu Wang, Christian Dallago, Dmitrii Nechaev, Florian Matthes, Burkhard Rost

BMC Bioinform., 2019

2018

NLSdb - major update for database of nuclear localization signals and nuclear export signals.

Michael Bernhofer, Tatyana Goldberg, Silvana Wolf, Mohamed Ahmed, Julian Zaugg, Mikael Bodén, Burkhard Rost

Nucleic Acids Res., 2018

LocText: relation extraction of protein localizations to assist database curation.

Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost

BMC Bioinform., 2018

Correcting mistakes in predicting distributions.

Valérie Marot-Lassauzaie, Michael Bernhofer, Burkhard Rost

Bioinform., 2018

HFSP: high speed homology-driven function annotation of proteins.

Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg

Bioinform., 2018

2017

Bioinformatics advances biology and medicine by turning big data troves into knowledge.

Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost

Inform. Spektrum, 2017

nala: text mining natural language mutation mentions.

Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam, Burkhard Rost

Bioinform., 2017

Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge.

Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost

Proceedings of the 50 Jahre Universitäts-Informatik in München, 2017

2016

Predicted Molecular Effects of Sequence Variants Link to System Level of Disease.

Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost

PLoS Comput. Biol., 2016

Tools and data services registry: a community effort to document bioinformatics resources.

Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak

Nucleic Acids Res., 2016

MSAViewer: interactive JavaScript visualization of multiple sequence alignments.

Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James B. Procter, Suzanna E. Lewis, Burkhard Rost, Tatyana Goldberg

Bioinform., 2016

2015

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.

Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost

PLoS Comput. Biol., 2015

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost

Bioinform., 2015

Evolutionary profiles improve protein-protein interaction prediction from sequence.

Tobias Hamp, Burkhard Rost

Bioinform., 2015

More challenges for machine-learning protein interactions.

Tobias Hamp, Burkhard Rost

Bioinform., 2015

2014

PredictProtein - an open resource for online prediction of protein structural and functional features.

Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost

Nucleic Acids Res., 2014

LocTree3 prediction of localization.

Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz, Michael Bernhofer, Alexander Betz, Laura Cizmadija, Kieu Trinh Do, Julia Gerke, Robert Greil, Vadim Joerdens, Maximilian Hastreiter, Katharina Hembach, Max Herzog, Maria Kalemanov, Michael Kluge, Alice Meier, Hassan Nasir, Ulrich Neumaier, Verena Prade, Jonas Reeb, Aleksandr Sorokoumov, Ilira Troshani, Susann Vorberg, Sonja Waldraff, Jonas Zierer, Henrik Nielsen, Burkhard Rost

Nucleic Acids Res., 2014

<i>HeatMapViewer</i>: interactive display of 2D data in biology.

Guy Yachdav, Maximilian Hecht, Metsada Pasmanik-Chor, Adva Yeheskel, Burkhard Rost

F1000Research, 2014

FreeContact: fast and free software for protein contact prediction from residue co-evolution.

László Kaján, Thomas A. Hopf, Matú Kala, Debora S. Marks, Burkhard Rost

BMC Bioinform., 2014

ISCB: past-present perspective for the International Society for Computational Biology.

Burkhard Rost

Bioinform., 2014

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Juan Miguel Cejuela, Peter McQuilton, Laura Ponting, Steven J. Marygold, Raymund Stefancsik, Gillian H. Millburn, Burkhard Rost

Database J. Biol. Databases Curation, 2014

2013

ISCB Computational Biology Wikipedia Competition.

Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost

PLoS Comput. Biol., 2013

Homology-based inference sets the bar high for protein function prediction.

Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane Boehm, Tatjana Braun, Maximilian Hecht, Mark Heron, Peter Hönigschmid, Thomas A. Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompass, Cedric Landerer, Yannick Mahlich, Manfred Roos, Burkhard Rost

BMC Bioinform., 2013

2012

Alternative Protein-Protein Interfaces Are Frequent Exceptions.

Tobias Hamp, Burkhard Rost

PLoS Comput. Biol., 2012

SNPdbe: constructing an nsSNP functional impacts database.

Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg

Bioinform., 2012

Paving the future: finding suitable ISMB venues.

Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso

Bioinform., 2012

LocTree2 predicts localization for all domains of life.

Tatyana Goldberg, Tobias Hamp, Burkhard Rost

Bioinform., 2012

2011

ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature.

Richard H. Lathrop, Burkhard Rost

PLoS Comput. Biol., 2011

LocDB: experimental annotations of localization for <i>Homo sapiens</i> and <i>Arabidopsis thaliana</i>.

Shruti Rastogi, Burkhard Rost

Nucleic Acids Res., 2011

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.

Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan

BMC Bioinform., 2011

2010

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal

Nucleic Acids Res., 2010

Protein secondary structure appears to be robust under <i>in silico</i> evolution while protein disorder appears not to be.

Christian Schaefer, Avner Schlessinger, Burkhard Rost

Bioinform., 2010

2009

Correlating protein function and stability through the analysis of single amino acid substitutions.

Yana Bromberg, Burkhard Rost

BMC Bioinform., 2009

Neural Networks Predict Protein Structure and Function.

Marco Punta, Burkhard Rost

Proceedings of the Artificial Neural Networks, 2009

2008

ISMB 2008 Toronto.

Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost

PLoS Comput. Biol., 2008

Physical protein-protein interactions predicted from microarrays.

Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost

Bioinform., 2008

Powerful fusion: PSI-BLAST and consensus sequences.

Dariusz Przybylski, Burkhard Rost

Bioinform., 2008

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.

Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi

Bioinform., 2008

SNAP predicts effect of mutations on protein function.

Yana Bromberg, Guy Yachdav, Burkhard Rost

Bioinform., 2008

Comprehensive <i>in silico</i> mutagenesis highlights functionally important residues in proteins.

Yana Bromberg, Burkhard Rost

Proceedings of the ECCB'08 Proceedings, 2008

2007

Natively Unstructured Loops Differ from Other Loops.

Avner Schlessinger, Jinfeng Liu, Burkhard Rost

PLoS Comput. Biol., 2007

Protein-Protein Interaction Hotspots Carved into Sequences.

Yanay Ofran, Burkhard Rost

PLoS Comput. Biol., 2007

ISMB/ECCB 2007: The Premier Conference on Computational Biology.

Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost

PLoS Comput. Biol., 2007

Natively unstructured regions in proteins identified from contact predictions.

Avner Schlessinger, Marco Punta, Burkhard Rost

Bioinform., 2007

ISIS: interaction sites identified from sequence.

Yanay Ofran, Burkhard Rost

Bioinform., 2007

Prediction of DNA-binding residues from sequence.

Yanay Ofran, Venkatesh Mysore, Burkhard Rost

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

Protein-Protein Interactions More Conserved within Species than across Species.

Sven Mika, Burkhard Rost

PLoS Comput. Biol., 2006

Epitome: database of structure-inferred antigenic epitopes.

Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost

Nucleic Acids Res., 2006

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.

Henry R. Bigelow, Burkhard Rost

Nucleic Acids Res., 2006

PROFbval: predict flexible and rigid residues in proteins.

Avner Schlessinger, Guy Yachdav, Burkhard Rost

Bioinform., 2006

Create and assess protein networks through molecular characteristics of individual proteins.

Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

NMPdb: Database of Nuclear Matrix Proteins.

Sven Mika, Burkhard Rost

Nucleic Acids Res., 2005

EVAcon: a protein contact prediction evaluation service.

Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia

Nucleic Acids Res., 2005

PROFcon: novel prediction of long-range contacts.

Marco Punta, Burkhard Rost

Bioinform., 2005

ISMB 2005 Organization.

H. V. Jagadish, David J. States, Burkhard Rost

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

ISMB 2005.

H. V. Jagadish, David J. States, Burkhard Rost

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

The PredictProtein server.

Burkhard Rost, Guy Yachdav, Jinfeng Liu

Nucleic Acids Res., 2004

LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.

Rajesh Nair, Burkhard Rost

Nucleic Acids Res., 2004

NLProt: extracting protein names and sequences from papers.

Sven Mika, Burkhard Rost

Nucleic Acids Res., 2004

CHOP: parsing proteins into structural domains.

Jinfeng Liu, Burkhard Rost

Nucleic Acids Res., 2004

Annotating Protein Function through Lexical Analysis.

Rajesh Nair, Burkhard Rost

AI Mag., 2004

AI and Bioinformatics.

Janice I. Glasgow, Igor Jurisica, Burkhard Rost

AI Mag., 2004

Protein names precisely peeled off free text.

Sven Mika, Burkhard Rost

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

The PredictProtein server.

Burkhard Rost, Jinfeng Liu

Nucleic Acids Res., 2003

LOC3D: annotate sub-cellular localization for protein structures.

Rajesh Nair, Burkhard Rost

Nucleic Acids Res., 2003

NLSdb: database of nuclear localization signals.

Rajesh Nair, Phil Carter, Burkhard Rost

Nucleic Acids Res., 2003

UniqueProt: creating representative protein sequence sets.

Sven Mika, Burkhard Rost

Nucleic Acids Res., 2003

NORSp: predictions of long regions without regular secondary structure.

Jinfeng Liu, Burkhard Rost

Nucleic Acids Res., 2003

EVA: evaluation of protein structure prediction servers.

Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost

Nucleic Acids Res., 2003

Static benchmarking of membrane helix predictions.

Andrew Kernytsky, Burkhard Rost

Nucleic Acids Res., 2003

META-PP: single interface to crucial prediction servers.

Volker A. Eyrich, Burkhard Rost

Nucleic Acids Res., 2003

PEP: Predictions for Entire Proteomes.

Phil Carter, Jinfeng Liu, Burkhard Rost

Nucleic Acids Res., 2003

DSSPcont: continuous secondary structure assignments for proteins.

Phil Carter, Claus A. F. Andersen, Burkhard Rost

Nucleic Acids Res., 2003

2002

Bioinformatics in structural genomics - Editorial.

Burkhard Rost, Barry Honig, Alfonso Valencia

Bioinform., 2002

Target space for structural genomics revisited.

Jinfeng Liu, Burkhard Rost

Bioinform., 2002

Inferring sub-cellular localization through automated lexical analysis.

Rajesh Nair, Burkhard Rost

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

ISMB 2002

Janice I. Glasgow, Burkhard Rost

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001

EVA: continuous automatic evaluation of protein structure prediction servers.

Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost

Bioinform., 2001

1999

A platform for integrating threading results with protein family analyses.

Florencio Pazos, Burkhard Rost, Alfonso Valencia

Bioinform., 1999

1997

Sisyphus and prediction of protein structure.

Burkhard Rost, Seán I. O'Donoghue

Comput. Appl. Biosci., 1997

Learning from Evolution to Predict Protein Structure.

Burkhard Rost

Proceedings of the Biocomputing and emergent computation: Proceedings of BCEC97, 1997

1996

Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming.

Burkhard Rost, Rita Casadio, Piero Fariselli

Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

1995

TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures.

Burkhard Rost

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994

Neuronale Netzwerke und evolutionäre Information: verbesserte Vorhersage der Sekundärstruktur von Proteinen ; (abgefasst in Englisch).

Burkhard Rost

PhD thesis, 1994

PHD - an automatic mail server for protein secondary structure prediction.

Burkhard Rost, Chris Sander, Reinhard Schneider

Comput. Appl. Biosci., 1994

Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy.

Burkhard Rost, Chris Sander, Reinhard Schneider

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1992

Exercising Multi-Layered Networks on Protein Secondary Structure.

Burkhard Rost, Chris Sander

Int. J. Neural Syst., 1992