Bruce Tidor

Affiliations:
  • MIT, Cambridge, USA


According to our database1, Bruce Tidor authored at least 19 papers between 1992 and 2013.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2013
Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology.
PLoS Comput. Biol., 2013

2011
An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability.
BMC Syst. Biol., 2011

Biochemical oscillator sensitivity analysis in the presence of conservation constraints.
Proceedings of the 48th Design Automation Conference, 2011

2010
Model Transformation of Metabolic Networks using a Petri Net Based Framework.
Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

2009
Sensitivity Analysis for Oscillating Dynamical Systems.
SIAM J. Sci. Comput., 2009

Rotamer optimization for protein design through MAP estimation and problem-size reduction.
J. Comput. Chem., 2009

CHARMM: The biomolecular simulation program.
J. Comput. Chem., 2009

Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.
J. Comput. Chem., 2009

MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets.
Bioinform., 2009

A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems.
Proceedings of the Distributed Computing, 2009

2008
Stimulus Design for Model Selection and Validation in Cell Signaling.
PLoS Comput. Biol., 2008

A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics.
ACM J. Emerg. Technol. Comput. Syst., 2008

Optimal Drug Cocktail Design: Methods for Targeting Molecular Ensembles and Insights from Theoretical Model Systems.
J. Chem. Inf. Model., 2008

2007
The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism.
PLoS Comput. Biol., 2007

Efficient optimization of electrostatic interactions between biomolecules.
Proceedings of the 46th IEEE Conference on Decision and Control, 2007

2006
FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2006

2002
Fast methods for simulation of biomolecule electrostatics.
Proceedings of the 2002 IEEE/ACM International Conference on Computer-aided Design, 2002

1993
An Analysis of Selection Procedures with Particular Attention Paid to Proportional and Boltzmann Selection.
Proceedings of the 5th International Conference on Genetic Algorithms, 1993

1992
Increased Flexibility in Genetic Algorithms: the Use of variable Boltzmann Selective pressure to control Propagation.
Proceedings of the Computer Science and Operations Research, 1992


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