Bruce E. Shapiro

According to our database, Bruce E. Shapiro authored at least 9 papers between 2001 and 2016.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2016

Pycellerator: an arrow-based reaction-like modelling language for biological simulations.

Bruce E. Shapiro, Eric Mjolsness

Bioinform., 2016

2006

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka

Nucleic Acids Res., 2006

Application of a Generalized Mwc Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes.

Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness

J. Bioinform. Comput. Biol., 2006

2005

An enzyme mechanism language for the mathematical modeling of metabolic pathways.

Chin-Rang Yang, Bruce E. Shapiro, Eric Mjolsness, G. Wesley Hatfield

Bioinform., 2005

Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem.

Henrik Jönsson, Marcus Heisler, G. Venugopala Reddy, Vikas Agrawal, Victoria Gor, Bruce E. Shapiro, Eric Mjolsness, Elliot M. Meyerowitz

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

MathSBML: a package for manipulating SBML-based biological models.

Bruce E. Shapiro, Michael Hucka, Andrew Finney, John Doyle

Bioinform., 2004

2003

Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations.

Bruce E. Shapiro, Andre Levchenko, Elliot M. Meyerowitz, Barbara J. Wold, Eric Mjolsness

Bioinform., 2003

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang

Bioinform., 2003

2001

Osmotic Forces and Gap Junctions in Spreading Depression: A Computational Model.

Bruce E. Shapiro

J. Comput. Neurosci., 2001