Brian Walenz

According to our database, Brian Walenz authored at least 12 papers between 2000 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

Weighted minimizer sampling improves long read mapping.

Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian Walenz, Sergey Koren, Adam M. Phillippy

Bioinform., 2020

2019

Integrating Hi-C links with assembly graphs for chromosome-scale assembly.

Jay Ghurye, Arang Rhie, Brian Walenz, Anthony D. Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren

PLoS Comput. Biol., 2019

2011

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing.

Brian Walenz, Liliana Florea

Bioinform., 2011

2010

An algorithm for automated closure during assembly.

Sergey Koren, Jason R. Miller, Brian Walenz, Granger G. Sutton

BMC Bioinform., 2010

2008

Aggressive assembly of pyrosequencing reads with mates.

Jason R. Miller, Arthur L. Delcher, Sergey Koren, Eli Venter, Brian Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark M. Mobarry, Granger G. Sutton

Bioinform., 2008

Consensus generation and variant detection by Celera Assembler.

Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton

Bioinform., 2008

2005

A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data.

Ross A. Lippert, Clark M. Mobarry, Brian Walenz

J. Comput. Biol., 2005

A Tool for Analyzing Mate Pairs in Assemblies (TAMPA).

Ian M. Dew, Brian Walenz, Granger G. Sutton

J. Comput. Biol., 2005

2004

1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap.

Alberto Caprara, Robert D. Carr, Sorin Istrail, Giuseppe Lancia, Brian Walenz

J. Comput. Biol., 2004

2001

101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem.

Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Visualization challenges for a new cyberpharmaceutical computing paradigm.

Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail

Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, 2001

2000

Algorithmic strategies in combinatorial chemistry.

Deborah Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz

Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000