Brian G. Pierce

According to our database, Brian G. Pierce authored at least 13 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Exploring the potential of structure-based deep learning approaches for T cell receptor design.

Helder Veras Ribeiro filho, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R. Felbinger, José Geraldo de Carvalho Pereira, Brian G. Pierce, Paulo Sérgio Lopes-de-Oliveira

PLoS Comput. Biol., 2024

2023

TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.

Rui Yin, Helder Veras Ribeiro filho, Valerie Lin, Ragul Gowthaman, Melyssa Cheung, Brian G. Pierce

Nucleic Acids Res., July, 2023

2021

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants.

Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce

PLoS Comput. Biol., 2021

CoV3D: a database of high resolution coronavirus protein structures.

Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Jared Adolf-Bryfogle, William R. Schief, Brian G. Pierce

Nucleic Acids Res., 2021

High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.

Tyler Borrman, Brian G. Pierce, Thom Vreven, Brian M. Baker, Zhiping Weng

Bioinform., 2021

2019

TCR3d: The T cell receptor structural repertoire database.

Ragul Gowthaman, Brian G. Pierce

Bioinform., 2019

2018

TCRmodel: high resolution modeling of T cell receptors from sequence.

Ragul Gowthaman, Brian G. Pierce

Nucleic Acids Res., 2018

2014

Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor.

Brian G. Pierce, Lance M. Hellman, Moushumi Hossain, Nishant K. Singh, Craig W. Vander Kooi, Zhiping Weng, Brian M. Baker

PLoS Comput. Biol., 2014

Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.

Brian G. Pierce, Thom Vreven, Zhiping Weng

BMC Bioinform., 2014

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.

Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, Zhiping Weng

Bioinform., 2014

Evaluating template-based and template-free protein-protein complex structure prediction.

Thom Vreven, Howook Hwang, Brian G. Pierce, Zhiping Weng

Briefings Bioinform., 2014

2013

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.

Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C. Greven, Bong-Hyun Kim, Jill Moore, Brian G. Pierce, Xianjun Dong, Daniel Virgil, Ewan Birney, Jui-Hung Hung, Zhiping Weng

Nucleic Acids Res., 2013

2005

M-ZDOCK: a grid-based approach for C_n symmetric multimer docking.

Brian G. Pierce, Weiwei Tong, Zhiping Weng

Bioinform., 2005