Brett R. South

According to our database, Brett R. South authored at least 55 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Sampling Adverse Drug Events in Outpatient Clinical Notes for Natural Language Processing Tasks.

Joseph M. Plasek, Abigail Salem, Stuart R. Lipsitz, Mary Amato, Dinah Foer, Heba Edrees, Suzanne V. Blackley, Brett R. South, Amol Rajmane, Mario Lorenzo, Paul Felt, Brendan Bull, Gretchen Purcell Jackson, Henry Feldman, David W. Bates, Li Zhou

Proceedings of the AMIA 2022, 2022

2021

Leveraging conversational technology to answer common COVID-19 questions.

Mollie McKillop, Brett R. South, Anita M. Preininger, Mitch Mason, Gretchen Purcell Jackson

J. Am. Medical Informatics Assoc., 2021

Differences in information accessed in a pharmacologic knowledge base using a conversational agent vs traditional search methods.

Anita M. Preininger, Bedda L. Rosario, Adam M. Buchold, Jeff Heiland, Nawshin Kutub, Bryan S. Bohanan, Brett R. South, Gretchen P. Jackson

Int. J. Medical Informatics, 2021

Extraction of Ambiguous Phrases Found Within Adverse Drug Event Mentions Using A Natural Language Processing-Based Annotation tool.

Zhoujun Sun, Rubina F. Rizvi, Shilo Anders, Brett R. South, Elisabeth Scheufele, Karlis Draulis, Henry J. Feldman

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Deploying Conversational Agents to Facilitate Housing Assistance Needs Resulting from COVID-19.

Brett R. South, Anita M. Preininger, Piyush Parmar, Rubina F. Rizvi, David Brotman, Shira Alevy, Mollie M. McKillop, Gretchen P. Jackson, William Kassler

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

A Modular Editorial Content Curation Framework for Pharmacological and Patient Knowledge Management.

Elisabeth L. Scheufele, Jason Hatanaka, Mya Baca, Stacy Laclaire, Jeff Heiland, Nawshin Kutub, Brett R. South, Gretchen P. Jackson

Proceedings of the AMIA 2020, 2020

Development and Training of an Artificial Intelligence (AI)-Based Clinical Trial Matching Tool for Oncology.

Tufia C. Haddad, Konstantinos Levantakos, Brett R. South, Dilhan Weeraratne, S. John Weroha, Andrea E. Hendrickson, Amit Mahipal, Parminder Singh, Megan Sands-Lincoln, Nawshin Kutub, Melissa Rammage, Eric Will, Jane Helgeson, Jane L. Snowdon, Gretchen P. Jackson

Proceedings of the AMIA 2020, 2020

Identifying and Leveraging Public Data Sources with Structured Social Determinants of Health Information for Observational Health Research.

Irene Dankwa-Mullan, Mollie M. McKillop, Metasebya Solomon, Anita M. Preininger, Mark C. Roebuck, Yull E. Arriaga, Judy George, Gretchen Purcell Jackson, Brett R. South

Proceedings of the AMIA 2020, 2020

2019

Moonstone: a novel natural language processing system for inferring social risk from clinical narratives.

Mike Conway, Salomeh Keyhani, Lee M. Christensen, Brett R. South, Marzieh Vali, Louise C. Walter, Danielle L. Mowery, Samir E. AbdelRahman, Wendy W. Chapman

J. Biomed. Semant., 2019

Characterizing VA Users with the OMOP Common Data Model.

Benjamin Viernes, Kristine E. Lynch, Brett R. South, Gregorio Coronado, Scott L. DuVall

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI).

Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Developing Synthetic VA Healthcare Data in OMOP CDM Model.

Jiantao Bian, Hamid Saoudian, Brett R. South, Kristine E. Lynch, Benjamin Viernes, Michael E. Matheny, Scott L. DuVall

Proceedings of the AMIA 2019, 2019

2018

Development and Validation of a Natural Language Processing Tool to Identify Patients Treated for Pneumonia across VA Emergency Departments.

Barbara E. Jones, Brett R. South, Y. Shao, C. C. Lu, Jianwei Leng, Brian C. Sauer, Adi V. Gundlapalli, Matthew H. Samore, Qiang Zeng

Appl. Clin. Inform., 2018

Flipping the Model for Biomedical Informatics Research.

Brett R. South, Kristine W. Lynch, Michael E. Matheny, Julie A. Lynch, Olga Efimova, Catherine Chanfreau-Coffinier, Olga V. Patterson, Benjamin Viernes, Scott L. DuVall

Proceedings of the AMIA 2018, 2018

Annotating Social Determinants of Health and Functional Status Information Using Publicly Accessible Corpora.

Ruth M. Reeves, Brett R. South, Glenn T. Gobbel, Lee M. Christensen, Paul Thompson, Wendy W. Chapman, Michael E. Matheny, Jeremiah R. Brown

Proceedings of the AMIA 2018, 2018

Detecting Current Episodes of Cholecystitis-related Pain from Veterans Affairs Clinical Notes using Natural Language Processing.

Danielle L. Mowery, Luke Martin, Brett R. South, Ellen Morrow, William Peche, Eric Wiesner, Wendy W. Chapman, Benjamin S. Brooke

Proceedings of the AMIA 2018, 2018

The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI).

Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker

Proceedings of the AMIA 2018, 2018

2017

Automatic Extraction of Social Determinants of Health from Veterans Affairs Clinical Documents using Natural Language Processing.

Brett R. South, Lee M. Christensen, Danielle L. Mowery, Melissa Castine, Marzieh Vali, Marjorie Carter, Mike Conway, Adi V. Gundlapalli, Wendy W. Chapman, Salomeh Keyhani

Proceedings of the Summit on Clinical Research Informatics, 2017

Investigating the Documentation of Electronic Cigarette Use in the Veteran Affairs Electronic Health Record: A Pilot Study.

Danielle L. Mowery, Brett R. South, Olga V. Patterson, Shu-Hong Zhu, Mike Conway

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

2016

Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2.

Danielle L. Mowery, Brett R. South, Lee M. Christensen, Jianwei Leng, Laura-Maria Peltonen, Sanna Salanterä, Hanna Suominen, David Martínez, Sumithra Velupillai, Noémie Elhadad, Guergana Savova, Sameer Pradhan, Wendy W. Chapman

J. Biomed. Semant., 2016

Extracting a stroke phenotype risk factor from Veteran Health Administration clinical reports: an information content analysis.

Danielle L. Mowery, Brian E. Chapman, Mike Conway, Brett R. South, Erin Madden, Salomeh Keyhani, Wendy W. Chapman

J. Biomed. Semant., 2016

Automated Extraction of Disease Activity Component Measures From Electronic Medical Records Using Natural Language Processing.

Brett R. South, Shobhit Mehortra, Jianwei Leng, Sophia Lu, Brian C. Sauer, Grant Cannon

Proceedings of the AMIA 2016, 2016

2015

Evaluating the state of the art in disorder recognition and normalization of the clinical narrative.

Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana Savova

J. Am. Medical Informatics Assoc., 2015

Annotating ADLs and IADLs in Veterans Affairs Clinical Documents.

Brett R. South, Danielle L. Mowery, Lee M. Christensen, Adi V. Gundlapalli, Melissa Tharp, Marzieh Vali, Marjorie E. Carter, Mike Conway, Salomeh Keyhani, Wendy W. Chapman

Proceedings of the AMIA 2015, 2015

RapTAT: A Tool for Assisted Annotation and Reviewer Training via Online Machine Learning.

Glenn T. Gobbel, Ruth M. Reeves, Brett R. South, Wendy W. Chapman, Jay Jarman, Steven Lay, Michael E. Matheny

Proceedings of the AMIA 2015, 2015

The Informatics Sculptor & the Clinical Annotator: Effective Annotation Strategies.

Nancy Gentry, Elizabeth Hanchrow, Glenn T. Gobbel, Brett R. South, Steven M. Bradley, Ruth M. Reeves

Proceedings of the AMIA 2015, 2015

2014

Evaluating the effects of machine pre-annotation and an interactive annotation interface on manual de-identification of clinical text.

Brett R. South, Danielle L. Mowery, Ying Suo, Jianwei Leng, Óscar Ferrández, Stéphane M. Meystre, Wendy W. Chapman

J. Biomed. Informatics, 2014

Text de-identification for privacy protection: A study of its impact on clinical text information content.

Stéphane M. Meystre, Óscar Ferrández, F. Jeffrey Friedlin, Brett R. South, Shuying Shen, Matthew H. Samore

J. Biomed. Informatics, 2014

Task 2: ShARe/CLEF eHealth Evaluation Lab 2014.

Danielle L. Mowery, Sumithra Velupillai, Brett R. South, Lee M. Christensen, David Martínez, Liadh Kelly, Lorraine Goeuriot, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman

Proceedings of the Working Notes for CLEF 2014 Conference, 2014

A System Usability Study Assessing a Machine-Assisted Interactive Interface to Support Annotation of Protected Health Information in Clinical Texts.

Brett R. South, Danielle L. Mowery, Chris Leng, Stéphane M. Meystre, Wendy W. Chapman

Proceedings of the AMIA 2014, 2014

Extracting Concepts Related to a Homelessness from the Free Text of VA Electronic Medical Records.

Adi V. Gundlapalli, Marjorie E. Carter, Guy Divita, Shuying Shen, Miland N. Palmer, Brett R. South, Begum Durgahee, Matthew H. Samore

Proceedings of the AMIA 2014, 2014

2013

BoB, a best-of-breed automated text de-identification system for VHA clinical documents.

Óscar Ferrández, Brett R. South, Shuying Shen, F. Jeffrey Friedlin, Matthew H. Samore, Stéphane M. Meystre

J. Am. Medical Informatics Assoc., 2013

What a Catch! Traits that Define Good Annotators.

Tyler Forbush, Shuying Shen, Brett R. South, Scott DuValla

Proceedings of the MEDINFO 2013, 2013

Overview of the ShARe/CLEF eHealth Evaluation Lab 2013.

Hanna Suominen, Sanna Salanterä, Sumithra Velupillai, Wendy Webber Chapman, Guergana K. Savova, Noemie Elhadad, Sameer Pradhan, Brett R. South, Danielle L. Mowery, Gareth J. F. Jones, Johannes Leveling, Liadh Kelly, Lorraine Goeuriot, David Martínez, Guido Zuccon

Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

Task 1: ShARe/CLEF eHealth Evaluation Lab 2013.

Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana K. Savova

Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Task 2: ShARe/CLEF eHealth Evaluation Lab 2013.

Danielle L. Mowery, Brett R. South, Lee M. Christensen, Laura-Maria Murtola, Sanna Salanterä, Hanna Suominen, David Martínez, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman

Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Creating a Reference Standard of Acronym and Abbreviation Annotations for the ShARe/CLEF eHealth Challenge 2013.

Danielle L. Mowery, Brett R. South, Jianwei Leng, Laura-Maria Murtola, Riitta Danielsson-Ojala, Sanna Salanterä, Wendy W. Chapman

Proceedings of the AMIA 2013, 2013

Using Natural Language Processing on the Free Text of Clinical Documents to Screen for Evidence of Homelessness Among US Veterans.

Adi V. Gundlapalli, Marjorie Carter, Miland N. Palmer, Thomas Ginter, Andrew Redd, Steve Pickard, Shuying Shen, Brett R. South, Guy Divita, Scott L. DuVall, Thien M. Nguyen, Leonard W. D'Avolio, Matthew H. Samore

Proceedings of the AMIA 2013, 2013

2012

Evaluating the state of the art in coreference resolution for electronic medical records.

Özlem Uzuner, Andreea Bodnari, Shuying Shen, Tyler Forbush, John Pestian, Brett R. South

J. Am. Medical Informatics Assoc., 2012

Automated extraction of ejection fraction for quality measurement using regular expressions in Unstructured Information Management Architecture (UIMA) for heart failure.

Jennifer H. Garvin, Scott L. DuVall, Brett R. South, Bruce E. Bray, Daniel Bolton, Julia Heavirland, Steve Pickard, Paul Heidenreich, Shuying Shen, Charlene R. Weir, Matthew H. Samore, Mary K. Goldstein

J. Am. Medical Informatics Assoc., 2012

A Prototype Tool Set to Support Machine-Assisted Annotation.

Brett R. South, Shuying Shen, Jianwei Leng, Tyler Forbush, Scott L. DuVall, Wendy W. Chapman

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents.

Óscar Ferrández, Brett R. South, Shuying Shen, Stéphane M. Meystre

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

Evaluation and Visualization of Human Annotator Learning Patterns.

Ying Suo, Shuying Shen, Scott L. DuVall, Özlem Uzuner, Brett R. South

Proceedings of the AMIA 2012, 2012

On the Road Towards Developing a Publicly Available Corpus of De-identified Clinical Texts.

Brett R. South, Danielle L. Mowery, Óscar Ferrández, Shuying Shen, Ying Suo, Mingyuan Zhang, Annie Chen, Liqin Wang, Stéphane M. Meystre, Wendy Webber Chapman

Proceedings of the AMIA 2012, 2012

The Relationship Between Structural Characteristics of Electronic Clinical Texts and Ratings of Document Quality.

Shuying Shen, Brett R. South, Jorie Butler, Robyn Barrus, Charlene R. Weir

Proceedings of the AMIA 2012, 2012

A Survey of VHA Privacy Officers for the External Use of Automatically De-Identified Clinical Documents.

Neil Nokes, Stéphane M. Meystre, Brett R. South, Jeffrey Scehnet, Shuying Shen, Óscar Ferrández, F. Jeffrey Friedlin, Matthew Maw, Matthew H. Samore

Proceedings of the AMIA 2012, 2012

CASPR: Friendly Annotation Management.

Tyler Forbush, Brad Adams, Shuying Shen, Brett R. South, Jonathan R. Nebeker, Scott L. DuVall

Proceedings of the AMIA 2012, 2012

Generalizability and Comparison of Automatic Clinical Text De-Identification Methods and Resources.

Óscar Ferrández, Brett R. South, Shuying Shen, F. Jeffrey Friedlin, Matthew H. Samore, Stéphane M. Meystre

Proceedings of the AMIA 2012, 2012

2011

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.

Özlem Uzuner, Brett R. South, Shuying Shen, Scott L. DuVall

J. Am. Medical Informatics Assoc., 2011

Creating Reusable Annotated Corpora with the Clinical Document Architecture.

Scott L. DuVall, Keith W. Boone, Adi V. Gundlapalli, Brett R. South, Shuying Shen, Jonathan R. Nebeker, Leonard W. D'Avolio, Matthew H. Samore

Proceedings of the 44th Hawaii International International Conference on Systems Science (HICSS-44 2011), 2011

2010

Textractor: a hybrid system for medications and reason for their prescription extraction from clinical text documents.

Stéphane M. Meystre, Julien Thibault, Shuying Shen, John F. Hurdle, Brett R. South

J. Am. Medical Informatics Assoc., 2010

Automatically Detecting Medications and the Reason for their Prescription in Clinical Narrative Text Documents.

Stéphane M. Meystre, Julien Thibault, Shuying Shen, John F. Hurdle, Brett R. South

Proceedings of the MEDINFO 2010, 2010

2009

Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease.

Brett R. South, Shuying Shen, Makoto Jones, Jennifer H. Garvin, Matthew H. Samore, Wendy Webber Chapman, Adi V. Gundlapalli

BMC Bioinform., 2009

Inductive Creation of an Annotation Schema and a Reference Standard for De-identification of VA Electronic Clinical Notes.

Jeanmarie Mayer, Shuying Shen, Brett R. South, Stéphane M. Meystre, F. Jeff Friedlin, William R. Ray, Matthew H. Samore

Proceedings of the AMIA 2009, 2009

2008

Optimizing A Syndromic Surveillance Text Classifier for Influenza-like Illness: Does Document Source Matter?

Brett R. South, Wendy W. Chapman, Sylvain Delisle, Shuying Shen, Ericka Kalp, Trish Perl, Matthew H. Samore, Adi V. Gundlapalli

Proceedings of the AMIA 2008, 2008