Boudewijn P. F. Lelieveldt

Orcid: 0000-0001-8269-7603

Affiliations:
  • Leiden University Medical Center, The Netherlands


According to our database1, Boudewijn P. F. Lelieveldt authored at least 156 papers between 1998 and 2024.

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Bibliography

2024
ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data.
IEEE Trans. Vis. Comput. Graph., January, 2024

2023
Interactions for Seamlessly Coupled Exploration of High-Dimensional Images and Hierarchical Embeddings.
Proceedings of the VMV 2023, 2023

Cytosplore Simian Viewer: Visual Exploration for Multi-Species Single-Cell RNA Sequencing Data.
Proceedings of the VCBM 2023: Eurographics Workshop on Visual Computing for Biology and Medicine, 2023

2022
Deep Recursive Embedding for High-Dimensional Data.
IEEE Trans. Vis. Comput. Graph., 2022

Visual Analysis of RIS Data for Endmember Selection.
Proceedings of the GCH 2022, 2022

Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images.
Proceedings of the 15th IEEE Pacific Visualization Symposium, 2022

2021
ImaCytE: Visual Exploration of Cellular Micro-Environments for Imaging Mass Cytometry Data.
IEEE Trans. Vis. Comput. Graph., 2021

Visual cohort comparison for spatial single-cell omics-data.
IEEE Trans. Vis. Comput. Graph., 2021

Hierarchical Prediction of Registration Misalignment Using a Convolutional LSTM: Application to Chest CT Scans.
IEEE Access, 2021

Visual Analysis of Tissue Images at Cellular Level.
Proceedings of the 23rd Eurographics Conference on Visualization, 2021


2020
GPGPU Linear Complexity t-SNE Optimization.
IEEE Trans. Vis. Comput. Graph., 2020

An Adaptive Intelligence Algorithm for Undersampled Knee MRI Reconstruction: Application to the 2019 fastMRI Challenge.
CoRR, 2020

An Adaptive Intelligence Algorithm for Undersampled Knee MRI Reconstruction.
IEEE Access, 2020

2019
An Efficient Preconditioner for Stochastic Gradient Descent Optimization of Image Registration.
IEEE Trans. Medical Imaging, 2019

12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr., 2019

Quantitative error prediction of medical image registration using regression forests.
Medical Image Anal., 2019

Hierarchical stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries.
CoRR, 2019

3D Convolutional Neural Networks Image Registration Based on Efficient Supervised Learning from Artificial Deformations.
CoRR, 2019

Focus+Context Exploration of Hierarchical Embeddings.
Comput. Graph. Forum, 2019

A model-guided method for improving coronary artery tree extractions from CCTA images.
Int. J. Comput. Assist. Radiol. Surg., 2019

CyTOFmerge: integrating mass cytometry data across multiple panels.
Bioinform., 2019

Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation.
Proceedings of the Graph Learning in Medical Imaging - First International Workshop, 2019

Comparative Analysis of Magnetic Resonance Fingerprinting Dictionaries via Dimensionality Reduction.
Proceedings of the Graph Learning in Medical Imaging - First International Workshop, 2019

Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System.
Proceedings of the 40th Annual Conference of the European Association for Computer Graphics, 2019

2018
DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks.
IEEE Trans. Vis. Comput. Graph., 2018

CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis.
IEEE Trans. Vis. Comput. Graph., 2018

Integrating spatial-anatomical regularization and structure sparsity into SVM: Improving interpretation of Alzheimer's disease classification.
NeuroImage, 2018

Linear tSNE optimization for the Web.
CoRR, 2018

Multiscale Visualization and Exploration of Large Bipartite Graphs.
Comput. Graph. Forum, 2018

A structural equation model for imaging genetics using spatial transcriptomics.
Brain Informatics, 2018

Semi-automated Processing of Real-Time CMR Scans for Left Ventricle Segmentation.
Proceedings of the Biomedical Image Registration - 8th International Workshop, 2018

Advanced two-layer level set with a soft distance constraint for dual surfaces segmentation in medical images.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

A quality score for coronary artery tree extraction results.
Proceedings of the Medical Imaging 2018: Computer-Aided Diagnosis, 2018

2017
Approximated and User Steerable tSNE for Progressive Visual Analytics.
IEEE Trans. Vis. Comput. Graph., 2017

Fully-automatic left ventricular segmentation from long-axis cardiac cine MR scans.
Medical Image Anal., 2017

Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI.
Frontiers Neuroinformatics, 2017

MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion.
Frontiers Neuroinformatics, 2017

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion.
Frontiers Neuroinformatics, 2017

Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study.
BMC Medical Imaging, 2017

Nonrigid Image Registration Using Multi-scale 3D Convolutional Neural Networks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

2016
Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration.
IEEE Trans. Medical Imaging, 2016

Morphological maturation of the mouse brain: An in vivo MRI and histology investigation.
NeuroImage, 2016

Hierarchical Stochastic Neighbor Embedding.
Comput. Graph. Forum, 2016

Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets.
Comput. Graph. Forum, 2016

Fusion of CTA and XA data using 3D centerline registration for plaque visualization during coronary intervention.
Proceedings of the Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February, 2016

Accuracy Estimation for Medical Image Registration Using Regression Forests.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Automatic aortic root segmentation in CTA whole-body dataset.
Proceedings of the Medical Imaging 2016: Computer-Aided Diagnosis, San Diego, 2016

2015
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.
PLoS Comput. Biol., 2015

Automated extraction and labelling of the arterial tree from whole-body MRA data.
Medical Image Anal., 2015

Segmentation of branching vascular structures using adaptive subdivision surface fitting.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Probabilistic atlas based labeling of the cerebral vessel tree.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Evaluating intensity normalization for multispectral classification of carotid atherosclerotic plaque.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

A Stochastic Quasi-Newton Method for Non-Rigid Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Hierarchical Shape Distributions for Automatic Identification of 3D Diastolic Vortex Rings from 4D Flow MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Detection of Alzheimer's disease using group lasso SVM-based region selection.
Proceedings of the Medical Imaging 2015: Computer-Aided Diagnosis, 2015

Fast linear geodesic shape regression using coupled logdemons registration.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014
Brain maturation of the adolescent rat cortex and striatum: Changes in volume and myelination.
NeuroImage, 2014

Fast automatic estimation of the optimization step size for nonrigid image registration.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Genomic connectivity networks based on the BrainSpan atlas of the developing human brain.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Automatic registration of imaging mass spectrometry data to the Allen Brain Atlas transcriptome.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Image Analysis Challenges in Translational Molecular Imaging Research.
Proceedings of the BIODEVICES 2014, 2014

2013
Statistical coronary motion models for 2D + t/3D registration of X-ray coronary angiography and CTA.
Medical Image Anal., 2013

Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease.
Frontiers Neuroinformatics, 2013

Comparative exploration of whole-body MR through locally rigid transforms.
Int. J. Comput. Assist. Radiol. Surg., 2013

Deformation texture-based features for classification in Alzheimer's disease.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Automatic Extraction of the 3D Left Ventricular Diastolic Transmitral Vortex Ring from 3D Whole-Heart Phase Contrast MRI Using Laplace-Beltrami Signatures.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2013

Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Joint Intensity Inhomogeneity Correction for Whole-Body MR Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Model-based alignment of Look-Locker MRI sequences for calibrated myocardical scar tissue quantification.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012
Regression-Based Cardiac Motion Prediction From Single-Phase CTA.
IEEE Trans. Medical Imaging, 2012

Fully Automated Attenuation Measurement and Motion Correction in FLIP Image Sequences.
IEEE Trans. Medical Imaging, 2012

Statistical Shape Model-Based Femur Kinematics From Biplane Fluoroscopy.
IEEE Trans. Medical Imaging, 2012

Cardiac MR perfusion image processing techniques: A survey.
Medical Image Anal., 2012

Comprehensive visualization of multimodal cardiac imaging data for assessment of coronary artery disease: first clinical results of the SMARTVis tool.
Int. J. Comput. Assist. Radiol. Surg., 2012

Robust Motion Correction in the Frequency Domain of Cardiac MR Stress Perfusion Sequences.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Trends in Bioimaging and Signal Processing [In the Spotlight].
IEEE Signal Process. Mag., 2011

2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models.
Medical Image Anal., 2011

A patient-specific visualization tool for comprehensive analysis of coronary CTA and perfusion MRI data.
Proceedings of the Medical Imaging 2011: Visualization, 2011

Comparison of Shape Regression Methods under Landmark Position Uncertainty.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Automated Registration of Whole-Body Follow-Up MicroCT Data of Mice.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Atlas-based articulated skeleton segmentation of μSPECT mouse data.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Towards integrated analysis of longitudinal whole-body small animal imaging studies.
Proceedings of the IEEE International Conference on Acoustics, 2011

Slice-Based Combination of Rest and Dobutamine-Stress Cardiac MRI Using a Statistical Motion Model to Identify Myocardial Infarction: Validation against Contrast-Enhanced MRI.
Proceedings of the Functional Imaging and Modeling of the Heart, 2011

2010
Articulated Planar Reformation for Change Visualization in Small Animal Imaging.
IEEE Trans. Vis. Comput. Graph., 2010

Model driven quantification of left ventricular function from sparse single-beat 3D echocardiography.
Medical Image Anal., 2010

Atlas-based whole-body segmentation of mice from low-contrast Micro-CT data.
Medical Image Anal., 2010

Correspondence free 3D statistical shape model fitting to sparse x-ray projections.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Conditional Shape Models for Cardiac Motion Estimation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Atlas-based organ & bone approximation for ex-vivo µMRI mouse data: a pilot study.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Confidence of model based shape reconstruction from sparse data.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009
Automated Detection of Regional Wall Motion Abnormalities Based on a Statistical Model Applied to Multislice Short-Axis Cardiac MR Images.
IEEE Trans. Medical Imaging, 2009

Atlas-driven scan planning for high-resolution micro-SPECT data acquisition based on multi-view photographs: a pilot study.
Proceedings of the Medical Imaging 2009: Visualization, 2009

2D/3D Registration of Micro-CT Data to Multi-View Photographs Based on a 3D Distance Map.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Identification of Cellular Dynamic Patterns Resulting from Repetitive Photobleaching Using Independent Component Analysis.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Left Ventricle Segmentation from Contrast Enhanced Fast Rotating Ultrasound Images Using Three Dimensional Active Shape Models.
Proceedings of the Functional Imaging and Modeling of the Heart, 2009

2008
Fully Automated Motion Correction in First-Pass Myocardial Perfusion MR Image Sequences.
IEEE Trans. Medical Imaging, 2008

Guest Editorial Functional Imaging of the Heart.
IEEE Trans. Medical Imaging, 2008

A 3-D Active Shape Model Driven by Fuzzy Inference: Application to Cardiac CT and MR.
IEEE Trans. Inf. Technol. Biomed., 2008

Information Processing in Medical Imaging 2007.
Medical Image Anal., 2008

Segmentation of myocardial perfusion MR sequences with multi-band active appearance models driven by spatial and temporal features.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Organ approximation in muCT data with low soft tissue contrast using an articulated whole-body atlas.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
Fully automatic estimation of object pose for segmentation initialization: application to cardiac MR and echocardiography images.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Integrated visualization of multi-angle bioluminescence imaging and micro CT.
Proceedings of the Medical Imaging 2007: Visualization and Image-Guided Procedures, 2007

Fully Automated Whole-Body Registration in Mice Using an Articulated Skeleton Atlas.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Fully Automated Registration of First-Pass Myocardial Perfusion MRI Using Independent Component Analysis.
Proceedings of the Information Processing in Medical Imaging, 2007

2006
Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming.
IEEE Trans. Medical Imaging, 2006

SPASM: A 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data.
Medical Image Anal., 2006

Analysis of first-pass myocardial perfusion MRI using independent component analysis.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Efficient reconstruction of cardiac LV surfaces using a 3D sparse ASM.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

2005
Automated quantification of cardiac short-axis multi-slice CT images for assessment of left ventricular global function.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

3D Model-Based Approach to Lung Registration and Prediction of Respiratory Cardiac Motion.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Automatic Prediction of Myocardial Contractility Improvement in Stress MRI Using Shape Morphometrics with Independent Component Analysis.
Proceedings of the Information Processing in Medical Imaging, 2005

Parametric Optimization of a Model-Based Segmentation Algorithm for Cardiac MR Image Analysis: A Grid-Computing Approach.
Proceedings of the From Grid to Healthgrid, 2005

Automated Segmentation of X-ray Left Ventricular Angiograms Using Multi-View Active Appearance Models and Dynamic Programming.
Proceedings of the Functional Imaging and Modeling of the Heart, 2005

Long-Axis Cardiac MRI Contour Detection with Adaptive Virtual Exploring Robot.
Proceedings of the Functional Imaging and Modeling of the Heart, 2005

SPASM: Segmentation of Sparse and Arbitrarily Oriented Cardiac MRI Data Using a 3D-ASM.
Proceedings of the Functional Imaging and Modeling of the Heart, 2005

Statistical Modeling and Segmentation in Cardiac MRI Using a Grid Computing Approach.
Proceedings of the Advances in Grid Computing, 2005

2004
Automatic plaque characterization and vessel wall segmentation in magnetic resonance images of atherosclerotic carotid arteries.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Detecting Regional Abnormal Cardiac Contraction in Short-Axis MR Images Using Independent Component Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Extraction of Myocardial Contractility Patterns from Short-Axes MR Images Using Independent Component Analysis.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

2003
Independent component analysis in statistical shape models.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Left ventricle contour detection in x-ray angiograms using multi-view active appearance models.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Disease characterization of active appearance model coefficients.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Automated classification of wall motion abnormalities by principal component analysis of endocardial shape motion patterns in echocardiograms.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Three-dimensional active shape model matching for left ventricle segmentation in cardiac CT.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

ICA vs. PCA Active Appearance Models: Application to Cardiac MR Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Optic Flow Computation from Cardiac MR Tagging Using a Multiscale Differential Method: A Comparative Study with Velocity-Encoded MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Accuracy of Fully Automatic vs. Manual Planning of Cardiac MR Acquisitions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Cardiac LV Segmentation Using a 3D Active Shape Model Driven by Fuzzy Inference.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Multi-view Active Appearance Models: Application to X-Ray LV Angiography and Cardiac MRI.
Proceedings of the Information Processing in Medical Imaging, 2003

Computer-aided diagnosis via model-based shape analysis: cardiac.
Proceedings of the CARS 2003. Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition, 2003

Multi-view active appearance models for consistent segmentation of multiple standard views: application to long and short-axis cardiac MR images.
Proceedings of the CARS 2003. Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition, 2003

2002
3-D Active Appearance Models: Segmentation of Cardiac MR and Ultrasound Images.
IEEE Trans. Medical Imaging, 2002

Automatic Segmentation of Echocardiographic Sequences by Active Appearance Motion Models.
IEEE Trans. Medical Imaging, 2002

Optimal design of radial basis function neural networks for fuzzy-rule extraction in high dimensional data.
Pattern Recognit., 2002

Segmentation of cardiac MR volume data using 3D active appearance models.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

Fully automated endocardial contour detection in time sequences of echocardiograms by three-dimensional active appearance models.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

2001
Multistage Hybrid Active Appearance Model Matching: Segmentation of Left and Right Ventricles in Cardiac MR Images.
IEEE Trans. Medical Imaging, 2001

Neuro-Fuzzy Systems for Computer-Aided Myocardial Viability Assessment.
IEEE Trans. Medical Imaging, 2001

Time-continuous segmentation of cardiac MR image sequences using active appearance motion models.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Active appearance motion models for endocardial contour detection in time sequences of echocardiograms.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

A Virtual Exploring Robot for Adaptive Left Ventricle Contour Detection in Cardiac MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Time-Continuous Segmentation of Cardiac Image Sequences Using Active Appearance Motion Models.
Proceedings of the Information Processing in Medical Imaging, 2001

Active Appearance Motion Model Segmentation.
Proceedings of the 2nd International Workshop on Digital and Computational Video (DCV 2001), 2001

Time continuous segmentation of cardiac MR images using Active Appearance Motion Models.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

Active Appearance - Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms.
Proceedings of the CARS 2001. Computer Assisted Radiology and Surgery. Proceedings of the 15th International Congress and Exhibition, 2001

2000
A multiresolution image segmentation technique based on pyramidal segmentation and fuzzy clustering.
IEEE Trans. Image Process., 2000

Anatomical Modeling with Fuzzy Implicit Surface Templates: Application to Automated Localization of the Heart and Lungs in Thoracic MR Volumes.
Comput. Vis. Image Underst., 2000

Segmentation of cardiac MR images: an active appearance model approach.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

A Neuro-Fuzzy System for Automatic Assessment of Myocardial Viability in Positron Emission Tomography.
Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks, 2000

1999
Anatomical Model Matching With Fuzzy Implicit Surfaces for Segmentation of Thoracic Volume Scans.
IEEE Trans. Medical Imaging, 1999

Fuzzy feature selection.
Pattern Recognit., 1999

Anatomical Modeling with Fuzzy Implicit Surfaces: Application to Automated Localization of the Heart and Lungs in Thoracic MR Images.
Proceedings of the Information Processing in Medical Imaging, 1999

1998
A new cluster validity index for the fuzzy c-mean.
Pattern Recognit. Lett., 1998


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