Bogdan Pasaniuc

According to our database, Bogdan Pasaniuc authored at least 34 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis.

Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso

Bioinform., May, 2023

2021

Leveraging eQTLs to identify individual-level tissue of interest for a complex trait.

Arunabha Majumdar, Claudia Giambartolomei, Na Cai, Tanushree Haldar, Tommer Schwarz, Michael J. Gandal, Jonathan Flint, Bogdan Pasaniuc

PLoS Comput. Biol., 2021

Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits.

Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman

PLoS Comput. Biol., 2021

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.

Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky

J. Comput. Biol., 2021

A two-step approach to testing overall effect of gene-environment interaction for multiple phenotypes.

Arunabha Majumdar, Kathryn S. Burch, Tanushree Haldar, Sriram Sankararaman, Bogdan Pasaniuc, W. James Gauderman, John S. Witte

Bioinform., 2021

Integrative Analyses Identify Susceptibility Genes Underlying COVID-19 Hospitalization.

Kritika Singh, Gita Pathak, Tyne Miller-Flemming, Frank Wendt, Nava Ehsan, Kangcheng Hou, Ruth Johnson, Zeyun Lu, Shyamalika Gopalan, Loic Yang, Pejman Mohammadi, Bogdan Pasaniuc, Renato Polimanti, Lea Davis, Nicholas Mancuso

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

A Scalable Method for Estimating the Regional Polygenicity of Complex Traits.

Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman

Proceedings of the Research in Computational Molecular Biology, 2020

Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.

Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

2019

RAISS: robust and accurate imputation from summary statistics.

Hanna Julienne, Huwenbo Shi, Bogdan Pasaniuc, Hugues Aschard

Bioinform., 2019

Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation.

Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman

Proceedings of the Research in Computational Molecular Biology, 2019

2018

A unifying framework for joint trait analysis under a non-infinitesimal model.

Ruth Johnson, Huwenbo Shi, Bogdan Pasaniuc, Sriram Sankararaman

Bioinform., 2018

A Bayesian framework for multiple trait colocalization from summary association statistics.

Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos

Bioinform., 2018

2017

Improved methods for multi-trait fine mapping of pleiotropic risk loci.

Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc

Bioinform., 2017

Enhanced methods to detect haplotypic effects on gene expression.

Robert Brown, Gleb Kichaev, Nicholas Mancuso, James Boocock, Bogdan Pasaniuc

Bioinform., 2017

2015

A Spatial Haplotype Copying Model with Applications to Genotype Imputation.

Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc

J. Comput. Biol., 2015

A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data.

Huwenbo Shi, Bogdan Pasaniuc, Kenneth L. Lange

Bioinform., 2015

Identification of causal genes for complex traits.

Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin

Bioinform., 2015

2014

Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals.

Robert Brown, Bogdan Pasaniuc

PLoS Comput. Biol., 2014

Fast and accurate imputation of summary statistics enhances evidence of functional enrichment.

Bogdan Pasaniuc, Noah Zaitlen, Huwenbo Shi, Gaurav Bhatia, Alexander Gusev, Joseph Pickrell, Joel Hirschhorn, David P. Strachan, Nick Patterson, Alkes L. Price

Bioinform., 2014

A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation.

Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc

Proceedings of the Research in Computational Molecular Biology, 2014

Identifying causal variants at loci with multiple signals of association.

Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.

Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin

Bioinform., 2013

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation.

Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin

Bioinform., 2013

2012

Analysis of case-control association studies with known risk variants.

Noah Zaitlen, Bogdan Pasaniuc, Nick Patterson, Samuela Pollack, Benjamin Voight, Leif Groop, David Altshuler, Brian E. Henderson, Laurence N. Kolonel, Loic Le Marchand, Kevin Waters, Christopher A. Haiman, Barbara E. Stranger, Emmanouil T. Dermitzakis, Peter Kraft, Alkes L. Price

Bioinform., 2012

Fast and accurate inference of local ancestry in Latino populations.

Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin

Bioinform., 2012

2011

Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments.

Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin

J. Comput. Biol., 2011

Optimal Testing of Digital Microfluidic Biochips.

Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky

INFORMS J. Comput., 2011

Genotyping common and rare variation using overlapping pool sequencing.

Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin

BMC Bioinform., 2011

2009

GEDI: Scalable Algorithms for Genotype Error Detection and Imputation

Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc

CoRR, 2009

Inference of locus-specific ancestry in closely related populations.

Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin

Bioinform., 2009

Imputation-Based Local Ancestry Inference in Admixed Populations.

Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu

Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

2008

Highly Scalable Genotype Phasing by Entropy Minimization.

Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.

Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc

J. Comput. Biol., 2008

2006

Highly Scalable Genotype Phasing by Entropy Minimization.

Bogdan Pasaniuc, Ion I. Mandoiu

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006