Blaz Zupan
Orcid: 0000-0002-5864-7056Affiliations:
- University of Ljubljana, Slovenia
According to our database1,
Blaz Zupan
authored at least 115 papers
between 1995 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on ailab.si
On csauthors.net:
Bibliography
2024
openTSNE: A Modular <i>Python</i> Library for t-SNE Dimensionality Reduction and Embedding.
J. Stat. Softw., 2024
VERA: Generating Visual Explanations of Two-Dimensional Embeddings via Region Annotation.
CoRR, 2024
Teaching bioinformatics through the analysis of SARS-CoV-2: project-based training for computer science students.
Bioinform., 2024
2023
Embedding to reference t-SNE space addresses batch effects in single-cell classification.
Mach. Learn., February, 2023
Proceedings of the Discovery Science - 26th International Conference, 2023
Gene Interactions in Survival Data Analysis: A Data-Driven Approach Using Restricted Mean Survival Time and Literature Mining.
Proceedings of the Discovery Science - 26th International Conference, 2023
Ranking of Survival-Related Gene Sets Through Integration of Single-Sample Gene Set Enrichment and Survival Analysis.
Proceedings of the Artificial Intelligence in Medicine, 2023
Nation-Wide ePrescription Data Reveals Landscape of Physicians and Their Drug Prescribing Patterns in Slovenia.
Proceedings of the Artificial Intelligence in Medicine, 2023
2022
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
2021
Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401).
Dagstuhl Reports, 2021
Proceedings of the Conformal and Probabilistic Prediction and Applications, 2021
2020
Comput. Networks, 2020
2019
Bioinform., 2019
2017
dictyExpress: a web-based platform for sequence data management and analytics in <i>Dictyostelium</i> and beyond.
BMC Bioinform., 2017
2016
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins.
Bioinform., 2016
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
2015
Sieve-based relation extraction of gene regulatory networks from biological literature.
BMC Bioinform., December, 2015
WIREs Data Mining Knowl. Discov., 2015
Integrative Clustering by Nonnegative Matrix Factorization Can Reveal Coherent Functional Groups From Gene Profile Data.
IEEE J. Biomed. Health Informatics, 2015
PLoS Comput. Biol., 2015
J. Comput. Biol., 2015
2014
Assessment of Machine Learning Reliability Methods for Quantifying the Applicability Domain of QSAR Regression Models.
J. Chem. Inf. Model., 2014
BMC Bioinform., 2014
Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.
Bioinform., 2014
Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion.
Proceedings of the Research in Computational Molecular Biology, 2014
Matrix Factorization-Based Data Fusion for Gene Function Prediction in Baker's Yeast and Slime Mold.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
2013
Informatica (Slovenia), 2013
Informatica (Slovenia), 2013
Proceedings of the Data and Knowledge for Medical Decision Support, 2013
Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
2012
J. Mach. Learn. Res., 2012
Proceedings of the Rough Sets and Current Trends in Computing, 2012
2011
Intell. Data Anal., 2011
Stage prediction of embryonic stem cell differentiation from genome-wide expression data.
Bioinform., 2011
Proceedings of the Adaptive and Natural Computing Algorithms, 2011
Proceedings of the Artificial Intelligence in Medicine, 2011
Proceedings of the Artificial Intelligence in Medicine, 2011
2010
Proceedings of the Data Mining and Knowledge Discovery Handbook, 2nd ed., 2010
A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010
New components of the <i>Dictyostelium </i>PKA pathway revealed by Bayesian analysis of expression data.
BMC Bioinform., 2010
Text Mining approaches for Automated Literature Knowledge Extraction and Representation.
Proceedings of the MEDINFO 2010, 2010
2009
Proceedings of the Encyclopedia of Data Warehousing and Mining, Second Edition (4 Volumes), 2009
Nucleic Acids Res., 2009
Intell. Data Anal., 2009
dictyExpress: a <i>Dictyostelium discoideum </i>gene expression database with an explorative data analysis web-based interface.
BMC Bioinform., 2009
Subgroup Discovery in Data Sets with Multi-dimensional Responses: A Method and a Case Study in Traumatology.
Proceedings of the Artificial Intelligence in Medicine, 2009
Proceedings of the Artificial Intelligence in Medicine, 2009
2008
Int. J. Medical Informatics, 2008
Eur. J. Oper. Res., 2008
2007
FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data.
J. Biomed. Informatics, 2007
Polyketide synthase genes and the natural products potential of <i>Dictyostelium discoideum</i>.
Bioinform., 2007
Proceedings of the Computational Discovery of Scientific Knowledge, 2007
2006
Data Min. Knowl. Discov., 2006
Proceedings of the Fifteenth Text REtrieval Conference, 2006
2005
TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions.
Int. J. Medical Informatics, 2005
VizRank: finding informative data projections in functional genomics by machine learning.
Bioinform., 2005
Proceedings of the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2005
Proceedings of the Eleventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2005
Conquering the Curse of Dimensionality in Gene Expression Cancer Diagnosis: Tough Problem, Simple Models.
Proceedings of the Artificial Intelligence in Medicine, 2005
Data Mining in Medicine.
Proceedings of the Data Mining and Knowledge Discovery Handbook., 2005
2004
A function-decomposition method for development of hierarchical multi-attribute decision models.
Decis. Support Syst., 2004
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004
Proceedings of the Knowledge Discovery in Databases: PKDD 2004, 2004
Proceedings of the MEDINFO 2004, 2004
2003
Bioinform., 2003
GenePath: a system for inference of genetic networks and proposal of genetic experiments.
Artif. Intell. Medicine, 2003
Proceedings of the Artificial Intelligence in Medicine, 2003
2002
Construction and application of hierarchical socioeconomic decision models.
Informatica (Slovenia), 2002
Proceedings of the AMIA 2002, 2002
2001
Int. J. Medical Informatics, 2001
Proceedings of the MEDINFO 2001, 2001
Proceedings of the MEDINFO 2001, 2001
A Sixth International Workshop on Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP-2001).
Proceedings of the MEDINFO 2001, 2001
Proceedings of the Medical Data Analysis, Second International Symposium, 2001
Proceedings of the Artificial Intelligence Medicine, 2001
Proceedings of the Machine Learning and Its Applications, Advanced Lectures, 2001
Proceedings of the Data Fusion and Perception, 2001
2000
Int. J. Medical Informatics, 2000
Machine learning for survival analysis: a case study on recurrence of prostate cancer.
Artif. Intell. Medicine, 2000
Induction of Concept Hierarchies from Noisy Data.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000
1999
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999
Proceedings of the Inductive Logic Programming, 9th International Workshop, 1999
1998
IEEE Trans. Knowl. Data Eng., 1998
Experimental Evaluation of Three Partition Selection Criteria for Decision Table Decomposition.
Informatica (Slovenia), 1998
Relating clinical and neurophysiological assessment of spasticity by machine learning.
Int. J. Medical Informatics, 1998
Acquiring background knowledge for machine learning using function decomposition: a case study in rheumatology.
Artif. Intell. Medicine, 1998
Intelligent Data Analysis for Medical Diagnosis: Using Machine Learning and Temporal Abstraction.
AI Commun., 1998
1997
Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997
Machine Learning by Function Decomposition.
Proceedings of the Fourteenth International Conference on Machine Learning (ICML 1997), 1997
Proceedings of the Machine Learning: ECML-97, 1997
Acquiring and Validating Background Knowledge for Machine Learning Using Function Decomposition.
Proceedings of the Artificial Intelligence Medicine, 1997
1995
A Simulation and Optimization Environment for Models in Computational Neurobiology.
Proceedings of the EUROSIM'96, 1995