Björn Sommer

According to our database, Björn Sommer authored at least 62 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Research Data: "APL@voro - interactive visualization and analysis of cell membrane simulations".

Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer

Dataset, June, 2024

International symposium on integrative bioinformatics 2024 - editorial.

Can Türker, Christian Panse, Björn Sommer, Marcel Friedrichs, Ralf Hofestädt

J. Integr. Bioinform., 2024

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.

Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber

J. Integr. Bioinform., 2024

Foreword special section on VSI: C&G VCBM 2022.

Renata G. Raidou, Bjorn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu

Comput. Graph., 2024

2023

Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023).

Jan Byska, Michael Krone, Björn Sommer

Comput. Graph., May, 2023

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.

Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber

J. Integr. Bioinform., March, 2023

APL@voro - interactive visualization and analysis of cell membrane simulations.

Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer

Bioinform., February, 2023

2022

Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design.

Björn Sommer, Daisuke Inoue, Marc Baaden

J. Integr. Bioinform., 2022

Immersive Analytics with Abstract 3D Visualizations: A Survey.

Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber

Comput. Graph. Forum, 2022

Foreword.

Kay Nieselt, Steffen Oeltze-Jafra, Thomas Schultz, Noeska N. Smit, Björn Sommer

Comput. Graph., 2022

2021

TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour.

Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber

J. Vis., 2021

Specifications of standards in systems and synthetic biology: status and developments in 2021.

Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2021

Foreword to the special section on molecular graphics and visual analysis of molecular data (MolVA 2021).

Jan Byska, Michael Krone, Bjorn Sommer

Comput. Graph., 2021

32nd Annual Stereoscopic Displays and Applications Conference - Introduction.

Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer

Proceedings of the Stereoscopic Displays and Applications XXXII, 2021

Hybrid Stereoscopic Photography - Analogue Stereo Photography meets the Digital Age with the StereoCompass app.

Björn Sommer

Proceedings of the Stereoscopic Displays and Applications XXXII, 2021

2020

Specifications of standards in systems and synthetic biology: status and developments in 2020.

Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath

J. Integr. Bioinform., 2020

The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor.

Beatrice Giuliari, Manuel Kösters, Jan Zhou, Tim Dingersen, André J. Heissmann, Ralf Rotzoll, Jens Krüger, Alejandro Giorgetti, Björn Sommer

Proceedings of the 3rd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2020

31st Annual Stereoscopic Displays and Applications Conference - Introduction.

Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer

Proceedings of the Stereoscopic Displays and Applications XXXI, 2020

Immersive Design Engineering.

Björn Sommer, Chang Hee Lee, Nat Martin, Vanna Savina Torrisi

Proceedings of the Stereoscopic Displays and Applications XXXI, 2020

Bio-related Design Genres: A Survey on Familiarity and Potential Applications.

Nurul 'Ayn Ahmad Sayuti, Bjorn Sommer, Saeema Ahmed-Kristensen

Proceedings of the Interactivity and Game Creation, 2020

IoT Product Pleasurability - Investigating the Pleasurable User Experiences Between Conventional Products and IoT Products Through Watches.

Zidong Lin, Bjorn Sommer, Saeema Ahmed-Kristensen

Proceedings of the Interactivity and Game Creation, 2020

2019

The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development.

Björn Sommer

J. Integr. Bioinform., 2019

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.

Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath

J. Integr. Bioinform., 2019

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.

Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer

J. Integr. Bioinform., 2019

TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data.

Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber

Proceedings of the 12th International Symposium on Visual Information Communication and Interaction, 2019

BinocularsVR - A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS".

Bjorn Sommer, Stefan P. Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Máté Nagy, Martin Wikelski, Harald Reiterer, Falk Schreiber

Proceedings of the Engineering Reality of Virtual Reality 2019, 2019

30th Annual Stereoscopic Displays and Applications Conference - Introduction.

Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer

Proceedings of the Stereoscopic Displays and Applications XXX, 2019

Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation.

Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber

Proceedings of the Stereoscopic Displays and Applications XXX, 2019

2018

Immersive Analytics Applications in Life and Health Sciences.

Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber

Proceedings of the Immersive Analytics, 2018

From Virtual Reality to Immersive Analytics in Bioinformatics.

Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods

J. Integr. Bioinform., 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.

Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2018

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell.

Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer

J. Integr. Bioinform., 2018

Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility.

Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer

CoRR, 2018

3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender.

Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer

Proceedings of the 11th International Symposium on Visual Information Communication and Interaction, 2018

Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction.

Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer

Proceedings of the Adjunct Publication of the 26th Conference on User Modeling, 2018

Virtual Reality for Sensor Data Visualization and Analysis.

Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer

Proceedings of the Engineering Reality of Virtual Reality 2018, Burlingame, CA, USA, 28 January, 2018

Stereoscopic Displays and Applications XXIX - Introduction.

Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer

Proceedings of the Stereoscopic Displays and Applications XXIX, Burlingame, CA, USA, January 28, 2018

2017

Computational miRNomics - Integrative Approaches.

Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer

J. Integr. Bioinform., 2017

Integration and virtual reality exploration of biomedical data with CmPI and VANTED.

Björn Sommer, Falk Schreiber

it Inf. Technol., 2017

Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors.

Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber

Proceedings of the VCBM 17: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017

3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz.

Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber

Proceedings of the Stereoscopic Displays and Applications XXVIII, Burlingame, CA, USA, January 29, 2017

2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2016

DaTo: an atlas of biological databases and tools.

Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen

J. Integr. Bioinform., 2016

Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios.

Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer

J. Integr. Bioinform., 2016

Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments.

Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber

Proceedings of the Stereoscopic Displays and Applications XXVII, 2016

Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation.

Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang

Proceedings of the 2016 Big Data Visual Analytics, 2016

2015

Specifications of Standards in Systems and Synthetic Biology.

Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise

J. Integr. Bioinform., 2015

Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques.

Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber

Proceedings of the Big Data Visual Analytics, 2015

2014

Stereoscopic cell visualization: from mesoscopic to molecular scale.

Björn Sommer, Christian Bender, Tobias Hoppe, Christian Gamroth, Lukas Jelonek

J. Electronic Imaging, 2014

Membrane simulation analysis using Voronoi tessellation.

Gunther Lukat, Björn Sommer, Jens Krüger

J. Cheminformatics, 2014

Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization.

Thomas Waltemate, Björn Sommer, Mario Botsch

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2014

Network Analysis and Integration in a Virtual Cell Environment.

Björn Sommer

Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013

CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional level.

Björn Sommer

PhD thesis, 2013

Editorial.

Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise

J. Integr. Bioinform., 2013

APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories.

Gunther Lukat, Jens Krüger, Björn Sommer

J. Chem. Inf. Model., 2013

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets.

Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt

J. Bioinform. Comput. Biol., 2013

2012

The GMX-Plugin for the CELLmicrocosmos MembraneEditor.

Sebastian Rubert, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Alexander Schäfer, Jens Krüger, Björn Sommer

J. Cheminformatics, 2012

2011

CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems.

Björn Sommer, Tim Dingersen, Christian Gamroth, Sebastian E. Schneider, Sebastian Rubert, Jens Krüger, Karl-Josef Dietz

J. Chem. Inf. Model., 2011

Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes.

Björn Sommer, Tim Dingersen, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Sebastian Rubert, Alexander Schäfer, Jens Krüger

J. Cheminformatics, 2011

2010

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.

Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt

J. Integr. Bioinform., 2010

CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes.

Björn Sommer, Tim Dingersen, Sebastian E. Schneider, Sebastian Rubert, Christian Gamroth

J. Cheminformatics, 2010

CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.

Björn Sommer, Jörn Künsemöller, Norbert Sand, Arne Husemann, Madis Rumming, Benjamin Kormeier

Proceedings of the BIOINFORMATICS 2010, 2010