Bernhard Y. Renard
Orcid: 0000-0003-4589-9809
According to our database1,
Bernhard Y. Renard
authored at least 50 papers
between 2008 and 2025.
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Bibliography
2025
Electronic Health Records-based identification of newly diagnosed Crohn's Disease cases.
Artif. Intell. Medicine, 2025
2024
Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2.
BMC Bioinform., December, 2024
The three-year evolution of Germany's Digital Therapeutics reimbursement program and its path forward.
npj Digit. Medicine, 2024
PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks.
Bioinform., 2024
Sparse Explanations of Neural Networks Using Pruned Layer-Wise Relevance Propagation.
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Research Track, 2024
2023
Nucleic Acids Res., July, 2023
Comprehensive evaluation of peptide <i>de novo</i> sequencing tools for monoclonal antibody assembly.
Briefings Bioinform., January, 2023
PeerJ Comput. Sci., 2023
HiClass: a Python Library for Local Hierarchical Classification Compatible with Scikit-learn.
J. Mach. Learn. Res., 2023
CoRR, 2023
Proceedings of the Machine Learning in Computational Biology, November 30, 2023
Proceedings of the First Tiny Papers Track at ICLR 2023, 2023
2022
Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides.
Nat. Mach. Intell., 2022
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Bioinform., 2022
Bioinform., 2022
DrDimont: explainable drug response prediction from differential analysis of multi-omics networks.
Bioinform., 2022
Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection.
Bioinform., 2022
2021
Briefings Bioinform., 2021
2020
An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action.
F1000Research, 2020
An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action.
CoRR, 2020
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences.
Bioinform., 2020
DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks.
Bioinform., 2020
Predicting bacterial virulence factors - evaluation of machine learning and negative data strategies.
Briefings Bioinform., 2020
2019
Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation.
PLoS Comput. Biol., 2019
Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters.
PLoS Comput. Biol., 2019
2018
Bioinform., 2018
Bioinform., 2018
PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.
Bioinform., 2018
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
Briefings Bioinform., 2018
2017
Bioinform., 2017
2016
Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.
Bioinform., 2016
iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification.
Bioinform., 2016
2015
MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms.
Bioinform., 2015
Briefings Bioinform., 2015
2014
Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics.
Bioinform., 2014
Specificity control for read alignments using an artificial reference genome-guided false discovery rate.
Bioinform., 2014
Proceedings of the German conference on bioinformatics 2014, September 28, 2014
2013
Analyzing genome coverage profiles with applications to quality control in metagenomics.
Bioinform., 2013
2012
PLoS Comput. Biol., 2012
2011
2010
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.
Bioinform., 2010
Computational protein profile similarity screening for quantitative mass spectrometry experiments.
Bioinform., 2010
2009
Proceedings of the Discrete Geometry for Computer Imagery, 2009
2008