Bernd W. Brandt

According to our database, Bernd W. Brandt authored at least 14 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches.

Vincent Y. Pappalardo, Leyla Azarang, Egija Zaura, Bernd W. Brandt, Renée X. de Menezes

BMC Bioinform., December, 2024

2016

metaModules identifies key functional subnetworks in microbiome-related disease.

Ali May, Bernd W. Brandt, Mohammed El-Kebir, Gunnar W. Klau, Egija Zaura, Wim Crielaard, Jaap Heringa, Sanne Abeln

Bioinform., 2016

2015

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.

Ali May, Sanne Abeln, Mark J. Buijs, Jaap Heringa, Wim Crielaard, Bernd W. Brandt

Nucleic Acids Res., 2015

2014

A web server for protein-protein interaction network querying.

Mohammed El-Kebir, Bernd W. Brandt, Jaap Heringa, Gunnar W. Klau

BMC Syst. Biol., 2014

Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations.

Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa, Bernd W. Brandt

Bioinform., 2014

2013

Towards a database for genotype-phenotype association research: mining data from encyclopaedia.

Vesna Pajic, Gordana Pavlovic-Lazetic, Milos V. Beljanski, Bernd W. Brandt, Milos Pajic

Int. J. Data Min. Bioinform., 2013

2012

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage.

Bernd W. Brandt, Marc J. Bonder, Susan M. Huse, Egija Zaura

Nucleic Acids Res., 2012

Comparing clustering and pre-processing in taxonomy analysis.

Marc J. Bonder, Sanne Abeln, Egija Zaura, Bernd W. Brandt

Bioinform., 2012

2011

Protein analysis tools and services at IBIVU.

Bernd W. Brandt, Jaap Heringa

J. Integr. Bioinform., 2011

2010

Multi-Harmony: detecting functional specificity from sequence alignment.

Bernd W. Brandt, K. Anton Feenstra, Jaap Heringa

Nucleic Acids Res., 2010

2009

PhyloPars: estimation of missing parameter values using phylogeny.

Jorn Bruggeman, Jaap Heringa, Bernd W. Brandt

Nucleic Acids Res., 2009

webPRC: the Profile Comparer for alignment-based searching of public domain databases.

Bernd W. Brandt, Jaap Heringa

Nucleic Acids Res., 2009

2008

Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.

Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt

Nucleic Acids Res., 2008

SEQATOMS: a web tool for identifying missing regions in PDB in sequence context.

Bernd W. Brandt, Jaap Heringa, Jack A. M. Leunissen

Nucleic Acids Res., 2008