Berend Snel

According to our database, Berend Snel authored at least 13 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis.

Samuel H. A. von der Dunk, Paulien Hogeweg, Berend Snel

PLoS Comput. Biol., February, 2024

2021

Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.

Eva S. Deutekom, Berend Snel, Teunis J. P. van Dam

Briefings Bioinform., 2021

2019

Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.

Eva S. Deutekom, Julian Vosseberg, Teunis J. P. van Dam, Berend Snel

PLoS Comput. Biol., 2019

2013

Shared Protein Complex Subunits Contribute to Explaining Disrupted Co-occurrence.

Adrian Schneider, Michael F. Seidl, Berend Snel

PLoS Comput. Biol., 2013

2010

Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.

Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst, Berend Snel

BMC Bioinform., 2010

2009

Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes.

Like Fokkens, Berend Snel

PLoS Comput. Biol., 2009

2008

Protein Complex Evolution Does Not Involve Extensive Network Rewiring.

Teunis J. P. van Dam, Berend Snel

PLoS Comput. Biol., 2008

2007

STRING 7 - recent developments in the integration and prediction of protein interactions.

Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork

Nucleic Acids Res., 2007

Orthology prediction at scalable resolution by phylogenetic tree analysis.

René T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen

BMC Bioinform., 2007

Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.

Jos Boekhorst, Berend Snel

BMC Bioinform., 2007

Assessment of phylogenomic and orthology approaches for phylogenetic inference.

Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen

Bioinform., 2007

2005

STRING: known and predicted protein-protein associations, integrated and transferred across organisms.

Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork

Nucleic Acids Res., 2005

2003

STRING: a database of predicted functional associations between proteins.

Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel

Nucleic Acids Res., 2003