Berend C. Stoel

According to our database, Berend C. Stoel authored at least 25 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A deep learning-based comparative MRI model to detect inflammatory changes in rheumatoid arthritis.

Tahereh Hassanzadeh, Denis P. Shamonin, Yanli Li, Doortje I. Krijbolder, Monique Reijnierse, Annette H. M. van der Helm-van Mil, Berend C. Stoel

Biomed. Signal Process. Control., February, 2024

Integrated feature analysis for deep learning interpretation and class activation maps.

Yanli Li, Tahereh Hassanzadeh, Denis P. Shamonin, Monique Reijnierse, Annette H. M. van der Helm-van Mil, Berend C. Stoel

CoRR, 2024

Seg-metrics: a Python package to compute segmentation metrics.

Jingnan Jia, Marius Staring, Berend C. Stoel

CoRR, 2024

Using 3D point cloud and graph-based neural networks to improve the estimation of pulmonary function tests from chest CT.

Jingnan Jia, Bo Yu, Prerak Mody, Maarten K. Ninaber, Anne A. Schouffoer, Jeska K. De Vries-Bouwstra, Lucia J. M. Kroft, Marius Staring, Berend C. Stoel

Comput. Biol. Medicine, 2024

2023

Automatic Pulmonary Function Estimation From Chest CT Scans Using Deep Regression Neural Networks: The Relation Between Structure and Function in Systemic Sclerosis.

Jingnan Jia, Emiel R. Marges, Jeska K. De Vries-Bouwstra, Maarten K. Ninaber, Lucia J. M. Kroft, Anne A. Schouffoer, Marius Staring, Berend C. Stoel

IEEE Access, 2023

2022

Prediction of lung CT scores of systemic sclerosis by cascaded regression neural networks.

Jingnan Jia, Marius Staring, Irene Hernández-Girón, Lucia J. M. Kroft, Anne A. Schouffoer, Berend C. Stoel

Proceedings of the Medical Imaging 2022: Computer-Aided Diagnosis, San Diego, 2022

2021

Optimization of hepatic vasculature segmentation from contrast-enhanced MRI, exploring two 3D Unet modifications and various loss functions.

Oleksandra V. Ivashchenko, Zhiwei Zhai, Berend C. Stoel, Theodoor Jacques Marie Ruers

Proceedings of the Medical Imaging 2021: Image-Guided Procedures, 2021

Multi-Task Semi-Supervised Learning For Pulmonary Lobe Segmentation.

Jingnan Jia, Zhiwei Zhai, M. Els Bakker, Irene Hernández-Girón, Marius Staring, Berend C. Stoel

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020

A framework for pulmonary fissure segmentation in 3D CT images using a directional derivative of plate filter.

Hong Zhao, Berend C. Stoel, Marius Staring, M. Els Bakker, Jan Stolk, Ping Zhou, Changyan Xiao

Signal Process., 2020

2019

Registration of vascular structures using a hybrid mixture model.

Siming Bayer, Zhiwei Zhai, Maddalena Strumia, Xiaoguang Tong, Ying Gao, Marius Staring, Berend C. Stoel, Rebecca Fahrig, Arya Nabavi, Andreas Maier, Nishant Ravikumar

Int. J. Comput. Assist. Radiol. Surg., 2019

Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation.

Zhiwei Zhai, Marius Staring, Xuhui Zhou, Qiuxia Xie, Xiaojuan Xiao, M. Els Bakker, Lucia J. M. Kroft, Boudewijn P. F. Lelieveldt, Gudula J. A. M. Boon, Frederikus A. Klok, Berend C. Stoel

Proceedings of the Graph Learning in Medical Imaging - First International Workshop, 2019

2018

Pulmonary Vessel Tree Matching for Quantifying Changes in Vascular Morphology.

Zhiwei Zhai, Marius Staring, Hideki Ota, Berend C. Stoel

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2016

Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter.

Changyan Xiao, Berend C. Stoel, M. Els Bakker, Yuanyuan Peng, Jan Stolk, Marius Staring

IEEE Trans. Medical Imaging, 2016

A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection.

Daniel F. Malan, Stefan Johann van der Walt, Renata G. Raidou, Bas van den Berg, Berend C. Stoel, Charl P. Botha, Rob G. H. H. Nelissen, Edward R. Valstar

Int. J. Comput. Assist. Radiol. Surg., 2016

Lung vessel segmentation in CT images using graph cuts.

Zhiwei Zhai, Marius Staring, Berend C. Stoel

Proceedings of the Medical Imaging 2016: Image Processing, 2016

2014

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study.

Rina Dewi Rudyanto, Sjoerd Kerkstra, Eva M. van Rikxoort, Catalin I. Fetita, Pierre-Yves Brillet, Christophe Lefevre, Wenzhe Xue, Xiangjun Zhu, Jianming Liang, Ilkay Öksüz, Devrim Ünay, Kamuran Kadipasaoglu, Raúl San José Estépar, James C. Ross, George R. Washko, Juan-Carlos Prieto, Marcela Hernández Hoyos, Maciej Orkisz, Hans Meine, Markus Hüllebrand, Christina Stöcker, Fernando López-Mir, Valery Naranjo, Eliseo Villanueva, Marius Staring, Changyan Xiao, Berend C. Stoel, Anna Fabijanska, Erik Smistad

Medical Image Anal., 2014

2013

Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images.

Changyan Xiao, Marius Staring, Yaonan Wang, Denis P. Shamonin, Berend C. Stoel

IEEE Trans. Image Process., 2013

A derivative of stick filter for pulmonary fissure detection in CT images.

Changyan Xiao, Marius Staring, Juan Wang, Denis P. Shamonin, Berend C. Stoel

Proceedings of the Medical Imaging 2013: Image Processing, 2013

2012

Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting.

Denis P. Shamonin, Marius Staring, M. Els Bakker, Changyan Xiao, Jan Stolk, Johan H. C. Reiber, Berend C. Stoel

Proceedings of the Medical Imaging 2012: Image Processing, 2012

Local SIMPLE multi atlas-based segmentation applied to lung lobe detection on chest CT.

Maruti Agarwal, Emile A. Hendriks, Berend C. Stoel, M. Els Bakker, Johan H. C. Reiber, Marius Staring

Proceedings of the Medical Imaging 2012: Image Processing, 2012

2011

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.

Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim

IEEE Trans. Medical Imaging, 2011

A strain energy filter for 3D vessel enhancement with application to pulmonary CT images.

Changyan Xiao, Marius Staring, Denis P. Shamonin, Johan H. C. Reiber, Jan Stolk, Berend C. Stoel

Medical Image Anal., 2011

2010

A Strain Energy Filter for 3D Vessel Enhancement.

Changyan Xiao, Marius Staring, Denis P. Shamonin, Johan H. C. Reiber, Jan Stolk, Berend C. Stoel

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

2009

Towards local estimation of emphysema progression using image registration.

Marius Staring, M. Els Bakker, Denis P. Shamonin, Jan Stolk, Johan H. C. Reiber, Berend C. Stoel

Proceedings of the Medical Imaging 2009: Image Processing, 2009

2007

Labeling the pulmonary arterial tree in CT images for automatic quantification of pulmonary embolism.

Ralph J. M. Peters, Henk A. Marquering, Halil Dogan, Emile A. Hendriks, Albert de Roos, Johan H. C. Reiber, Berend C. Stoel

Proceedings of the Medical Imaging 2007: Computer-Aided Diagnosis, San Diego, 2007