Bercem Dutagaci

According to our database, Bercem Dutagaci authored at least 6 papers between 2017 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability.

Adan Gallardo, Bercem Dutagaci

J. Comput. Aided Mol. Des., December, 2024

2023

Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning.

Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D. Kaplan, Michael Feig

PLoS Comput. Biol., March, 2023

2022

Protein-Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations.

Adan Gallardo, Brandon M. Bogart, Bercem Dutagaci

J. Chem. Inf. Model., 2022

2019

Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning.

Stephanie A. Brocke, Alexandra Degen, Alexander D. MacKerell Jr., Bercem Dutagaci, Michael Feig

J. Chem. Inf. Model., 2019

2017

Determination of Hydrophobic Lengths of Membrane Proteins with the HDGB Implicit Membrane Model.

Bercem Dutagaci, Michael Feig

J. Chem. Inf. Model., December, 2017

Heterogeneous dielectric generalized Born model with a van der Waals term provides improved association energetics of membrane-embedded transmembrane helices.

Bercem Dutagaci, Maryam Sayadi, Michael Feig

J. Comput. Chem., 2017