Benno Schwikowski

According to our database, Benno Schwikowski authored at least 29 papers between 1996 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher.

Johann Dréo, Claire Laudy, Sebastian Lobentanzer, Marko Baric, Ekaterina Gaydukova, Benno Schwikowski

Proceedings of the 27th International Conference on Information Fusion, 2024

2022

An overview of machine learning methods for monotherapy drug response prediction.

Farzaneh Firoozbakht, Behnam Yousefi, Benno Schwikowski

Briefings Bioinform., 2022

2018

The Cytoscape Automation app article collection.

Barry Demchak, David Otasek, Alexander R. Pico, Gary D. Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker

F1000Research, 2018

2017

Network-based analysis of omics data: the LEAN method.

Frederik Gwinner, Gwénola Boulday, Claire Vandiedonck, Minh Arnould, Cécile Cardoso, Iryna Nikolayeva, Oriol Guitart-Pla, Cécile V. Denis, Olivier D. Christophe, Johann Beghain, Elisabeth Tournier-Lasserve, Benno Schwikowski

Bioinform., 2017

Detecting multi-way epistasis in family-based association studies.

Cheikh Loucoubar, Audrey V. Grant, Jean-François Bureau, Isabelle Casademont, Ndjido Ardo Bar, Avner Bar-Hen, Mamadou Diop, Joseph Faye, Fatoumata Diene Sarr, Abdoulaye Badiane, Adama Tall, Jean-François Trape, Freddy Cliquet, Benno Schwikowski, Mark Lathrop, Richard Edward Paul, Anavaj Sakuntabhai

Briefings Bioinform., 2017

2015

The Cyni framework for network inference in Cytoscape.

Oriol Guitart-Pla, Manjunath Kustagi, Frank Rügheimer, Andrea Califano, Benno Schwikowski

Bioinform., 2015

2014

The Cytoscape app article collection.

Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William J. R. Longabaugh, Christian Tannus Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H. Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker

F1000Research, 2014

2012

Mining proteomic data for biomedical research.

Laura Elo, Benno Schwikowski

WIREs Data Mining Knowl. Discov., 2012

Feature Detection with Controlled Error Rates in LC/MS Images.

Sébastien Li-Thiao-Té, Benno Schwikowski

J. Comput. Biol., 2012

2010

Evolution of metabolic network organization.

Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck

BMC Syst. Biol., 2010

Indexing and Searching a Mass Spectrometry Database.

Søren Besenbacher, Benno Schwikowski, Jens Stoye

Proceedings of the Algorithms and Applications, 2010

2008

Phylogenetic distances are encoded in networks of interacting pathways.

Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck

Bioinform., 2008

2007

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.

Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio

Bioinform., 2007

2006

Graph-based methods for analysing networks in cell biology.

Tero Aittokallio, Benno Schwikowski

Briefings Bioinform., 2006

2005

Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection.

David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski

BMC Bioinform., 2005

2004

Towards Optimally Multiplexed Applications of Universal Arrays.

Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini

J. Comput. Biol., 2004

Predicting protein-peptide interactions via a network-based motif sampler.

David J. Reiss, Benno Schwikowski

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

The Restriction Scaffold Problem.

Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir

J. Comput. Biol., 2003

Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions.

Benno Schwikowski, Martin Vingron

Discret. Appl. Math., 2003

Towards optimally multiplexed applications of universal DNA tag systems.

Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2002

Algorithms for Phylogenetic Footprinting.

Mathieu Blanchette, Benno Schwikowski, Martin Tompa

J. Comput. Biol., 2002

On enumerating all minimal solutions of feedback problems.

Benno Schwikowski, Ewald Speckenmeyer

Discret. Appl. Math., 2002

Discovering regulatory and signalling circuits in molecular interaction networks.

Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

Algorithmic Challenges in Mass Spectrometry and Systems Biology.

Benno Schwikowski

Proceedings of the 32. Jahrestagung der Gesellschaft für Informatik, Informatik bewegt, INFORMATIK 2002, Dortmund, Germany, September 30, 2002

2000

Universal DNA Tag Systems: A Combinatorial Design Scheme.

Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini

J. Comput. Biol., 2000

An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species.

Mathieu Blanchette, Benno Schwikowski, Martin Tompa

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1997

The Deferred Path Heuristic for the Generalized Tree Alignment Problem.

Benno Schwikowski, Martin Vingron

J. Comput. Biol., 1997

1996

Attacking Generalized tree Alignment by a Deferred Path Heuristic.

Benno Schwikowski, Martin Vingron

Proceedings of the German Conference on Bioinformatics, 1996

A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats.

Benno Schwikowski, Martin Vingron

Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996