Benjamin M. Good

According to our database, Benjamin M. Good authored at least 43 papers between 1999 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.

Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall

Patterns, 2021

The Gene Ontology resource: enriching a GOld mine.

Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan J. Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser

Nucleic Acids Res., 2021

Reactome and the Gene Ontology: digital convergence of data resources.

Benjamin M. Good, Kimberly Van Auken, David P. Hill, Huaiyu Mi, Seth Carbon, James P. Balhoff, Laurent-Philippe Albou, Paul D. Thomas, Christopher J. Mungall, Judith A. Blake, Peter D'Eustachio

Bioinform., 2021

2020

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts.

Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su

Bioinform., 2020

Structured reviews for data and knowledge-driven research.

Núria Queralt-Rosinach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su

Database J. Biol. Databases Curation, 2020

2019

ChlamBase: a curated model organism database for the Chlamydia research community.

Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su

Database J. Biol. Databases Curation, 2019

Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts.

Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su

Proceedings of the 1st Conference on Automated Knowledge Base Construction, 2019

2018

Arachne: an OWL RL Reasoner Applied to Gene Ontology Causal Activity Models (and Beyond).

James P. Balhoff, Benjamin M. Good, Seth Carbon, Chris Mungall

Proceedings of the ISWC 2018 Posters & Demonstrations, Industry and Blue Sky Ideas Tracks co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, USA, October 8th - to, 2018

2017

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good

Database J. Biol. Databases Curation, 2017

2016

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good

Bioinform., 2016

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good

Database J. Biol. Databases Curation, 2016

A crowdsourcing workflow for extracting chemical-induced disease relations from free text.

Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su

Database J. Biol. Databases Curation, 2016

Wikidata as a semantic framework for the Gene Wiki initiative.

Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su

Database J. Biol. Databases Curation, 2016

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.

Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong

Database J. Biol. Databases Curation, 2016

Crowdsourcing in biomedicine: challenges and opportunities.

Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su, Zhiyong Lu

Briefings Bioinform., 2016

Linking Wikidata to the Rest of the Semantic Web.

Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Opportunities and Challenges Presented by Wikidata in the Context of Biocuration.

Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

Exposing ambiguities in a relation-extraction gold standard with crowdsourcing.

Tong Shu Li, Benjamin M. Good, Andrew I. Su

CoRR, 2015

OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web.

Benjamin M. Good, Gavin Ha, Chi K. Ho, Mark D. Wilkinson

CoRR, 2015

Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond.

Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Session Introduction.

Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts.

Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

Benjamin M. Good, Max Nanis, Andrew I. Su

CoRR, 2014

2013

Ten Simple Rules for Cultivating Open Science and Collaborative R&D.

Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne

PLoS Comput. Biol., 2013

A task-based approach for Gene Ontology evaluation.

Erik L. Clarke, Salvatore Loguercio, Benjamin M. Good, Andrew I. Su

J. Biomed. Semant., 2013

Crowdsourcing for bioinformatics.

Benjamin M. Good, Andrew I. Su

Bioinform., 2013

2012

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Benjamin M. Good, Erik L. Clarke, Luca de Alfaro, Andrew I. Su

Nucleic Acids Res., 2012

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su

J. Biomed. Semant., 2012

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.

Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su

Database J. Biol. Databases Curation, 2012

A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology.

Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games.

Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

2009

Term based comparison metrics for controlled and uncontrolled indexing languages.

Benjamin M. Good, Joseph T. Tennis

Inf. Res., 2009

Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics.

Benjamin M. Good, Joseph T. Tennis, Mark D. Wilkinson

BMC Bioinform., 2009

2008

Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse.

François Belleau, Nicole Tourigny, Benjamin M. Good, Jean Morissette

Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

Evidence of term-structure differences among folksonomies and controlled indexing languages.

Benjamin M. Good, Joseph T. Tennis

Proceedings of the People Transforming Information - Information Transforming People, 2008

2007

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.

Young C. Song, Edward A. Kawas, Benjamin M. Good, Mark D. Wilkinson, Scott J. Tebbutt

Bioinform., 2007

Tag clouds for summarizing web search results.

Byron Yu-Lin Kuo, Thomas Hentrich, Benjamin M. Good, Mark D. Wilkinson

Proceedings of the 16th International Conference on World Wide Web, 2007

Ontology engineering using volunteer labor.

Benjamin M. Good, Mark D. Wilkinson

Proceedings of the 16th International Conference on World Wide Web, 2007

2006

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.

Benjamin M. Good, Edward A. Kawas, Byron Yu-Lin Kuo, Mark D. Wilkinson

BMC Bioinform., 2006

The Life Sciences Semantic Web is Full of Creeps!

Benjamin M. Good, Mark D. Wilkinson

Briefings Bioinform., 2006

Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development.

Benjamin M. Good, Erin M. Tranfield, Poh C. Tan, Marlene Shehata, Gurpreet K. Singhera, John Gosselink, Elena B. Okon, Mark D. Wilkinson

Proceedings of the Biocomputing 2006, 2006

A Smarter FAQ.

Benjamin M. Good, James Hartzell, Rodney S. Tosten

Proceedings of the 2006 International Conference on Information & Knowledge Engineering, 2006

1999

HIKE (HPKB Integrated Knowledge Environment) - A Query Interface and Integrated Knowledge Environment for HPKB.

Barbara Starr, Vinay K. Chaudhri, Boris Katz, Benjamin M. Good, Jérôme Thoméré

Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999