Benjamin C. Hitz

According to our database, Benjamin C. Hitz authored at least 18 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

RNAget: an API to securely retrieve RNA quantifications.

Sean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu

Bioinform., April, 2023

Data navigation on the ENCODE portal.

Meenakshi S. Kagda, Bonita Lam, Casey Litton, Corinn Small, Cricket A. Sloan, Emma Spragins, Forrest Tanaka, Ian Whaling, Idan Gabdank, Ingrid Youngworth, J. Seth Strattan, Jason A. Hilton, Jennifer Jou, Jessica Au, Jin-Wook Lee, Kalina Andreeva, Keenan Graham, Khine Lin, Matt Simison, Otto Jolanki, Paul Sud, Pedro Assis, Philip Adenekan, Eric Douglass, Mingjie Li, Stuart R. Miyasato, Weiwei Zhong, Yunhai Luo, Zachary Myers, J. Michael Cherry, Benjamin C. Hitz

CoRR, 2023

2020

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.

Yunhai Luo, Benjamin C. Hitz, Idan Gabdank, Jason A. Hilton, Meenakshi S. Kagda, Bonita Lam, Zachary Myers, Paul Sud, Jennifer Jou, Khine Lin, Ulugbek K. Baymuradov, Keenan Graham, Casey Litton, Stuart R. Miyasato, J. Seth Strattan, Otto Jolanki, Jin-Wook Lee, Forrest Tanaka, Philip Adenekan, Emma O'Neill, J. Michael Cherry

Nucleic Acids Res., 2020

2018

The Encyclopedia of DNA elements (ENCODE): data portal update.

Carrie A. Davis, Benjamin C. Hitz, Cricket A. Sloan, Esther T. Chan, Jean M. Davidson, Idan Gabdank, Jason A. Hilton, Kriti Jain, Ulugbek K. Baymuradov, Aditi K. Narayanan, Kathrina C. Onate, Keenan Graham, Stuart R. Miyasato, Timothy R. Dreszer, J. Seth Strattan, Otto Jolanki, Forrest Tanaka, J. Michael Cherry

Nucleic Acids Res., 2018

Prevention of data duplication for high throughput sequencing repositories.

Idan Gabdank, Esther T. Chan, Jean M. Davidson, Jason A. Hilton, Carrie A. Davis, Ulugbek K. Baymuradov, Aditi K. Narayanan, Kathrina C. Onate, Keenan Graham, Stuart R. Miyasato, Timothy R. Dreszer, J. Seth Strattan, Otto Jolanki, Forrest Tanaka, Benjamin C. Hitz, Cricket A. Sloan, J. Michael Cherry

Database J. Biol. Databases Curation, 2018

2016

ENCODE data at the ENCODE portal.

Cricket A. Sloan, Esther T. Chan, Jean M. Davidson, Venkat S. Malladi, J. Seth Strattan, Benjamin C. Hitz, Idan Gabdank, Aditi K. Narayanan, Marcus Ho, Brian T. Lee, Laurence D. Rowe, Timothy R. Dreszer, Greg Roe, Nikhil R. Podduturi, Forrest Tanaka, Eurie L. Hong, J. Michael Cherry

Nucleic Acids Res., 2016

The <i>Saccharomyces</i> Genome Database Variant Viewer.

Travis K. Sheppard, Benjamin C. Hitz, Stacia R. Engel, Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla S. Dalusag, Janos Demeter, Sage T. Hellerstedt, Kalpana Karra, Robert S. Nash, Kelley M. Paskov, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, J. Michael Cherry

Nucleic Acids Res., 2016

Integration of new alternative reference strain genome sequences into the <i>Saccharomyces</i> genome database.

Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla S. Dalusag, Janos Demeter, Stacia R. Engel, Sage T. Hellerstedt, Kalpana Karra, Benjamin C. Hitz, Robert S. Nash, Kelley M. Paskov, Travis K. Sheppard, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, J. Michael Cherry

Database J. Biol. Databases Curation, 2016

Principles of metadata organization at the ENCODE data coordination center.

Eurie L. Hong, Cricket A. Sloan, Esther T. Chan, Jean M. Davidson, Venkat S. Malladi, J. Seth Strattan, Benjamin C. Hitz, Idan Gabdank, Aditi K. Narayanan, Marcus Ho, Brian T. Lee, Laurence D. Rowe, Timothy R. Dreszer, Greg R. Roe, Nikhil R. Podduturi, Forrest Tanaka, Jason A. Hilton, J. Michael Cherry

Database J. Biol. Databases Curation, 2016

2015

Ontology application and use at the ENCODE DCC.

Venkat S. Malladi, Drew T. Erickson, Nikhil R. Podduturi, Laurence D. Rowe, Esther T. Chan, Jean M. Davidson, Benjamin C. Hitz, Marcus Ho, Brian T. Lee, Stuart R. Miyasato, Greg R. Roe, Matt Simison, Cricket A. Sloan, J. Seth Strattan, Forrest Tanaka, W. James Kent, J. Michael Cherry, Eurie L. Hong

Database J. Biol. Databases Curation, 2015

2014

<i>Saccharomyces</i> genome database provides new regulation data.

Maria C. Costanzo, Stacia R. Engel, Edith D. Wong, Paul Lloyd, Kalpana Karra, Esther T. Chan, Shuai Weng, Kelley M. Paskov, Greg R. Roe, Gail Binkley, Benjamin C. Hitz, J. Michael Cherry

Nucleic Acids Res., 2014

2013

The YeastGenome app: the <i>Saccharomyces</i> Genome Database at your fingertips.

Edith D. Wong, Kalpana Karra, Benjamin C. Hitz, Eurie L. Hong, J. Michael Cherry

Database J. Biol. Databases Curation, 2013

2012

Saccharomyces Genome Database: the genomics resource of budding yeast.

J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong

Nucleic Acids Res., 2012

YeastMine - an integrated data warehouse for <i>Saccharomyces cerevisiae</i> data as a multipurpose tool-kit.

Rama Balakrishnan, Julie Park, Kalpana Karra, Benjamin C. Hitz, Gail Binkley, Eurie L. Hong, Julie M. Sullivan, Gos Micklem, J. Michael Cherry

Database J. Biol. Databases Curation, 2012

2010

<i>Saccharomyces</i> Genome Database provides mutant phenotype data.

Stacia R. Engel, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Eurie L. Hong, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Julie Park, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kara Dolinski, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2010

2009

New mutant phenotype data curation system in the <i>Saccharomyces</i> Genome Database.

Maria C. Costanzo, Marek S. Skrzypek, Robert S. Nash, Edith D. Wong, Gail Binkley, Stacia R. Engel, Benjamin C. Hitz, Eurie L. Hong, J. Michael Cherry

Database J. Biol. Databases Curation, 2009

2008

Gene Ontology annotations at SGD: new data sources and annotation methods.

Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2008

2007

Expanded protein information at SGD: new pages and proteome browser.

Robert S. Nash, Shuai Weng, Benjamin C. Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, J. Michael Cherry

Nucleic Acids Res., 2007