Benjamin A. Shoemaker

According to our database, Benjamin A. Shoemaker authored at least 22 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

PubChem 2023 update.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton

Nucleic Acids Res., January, 2023

2021

PubChem in 2021: new data content and improved web interfaces.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2021

2019

PubChem 2019 update: improved access to chemical data.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2019

2017

PubChem BioAssay: 2017 update.

Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang

Nucleic Acids Res., 2017

2016

PubChem Substance and Compound databases.

Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

Nucleic Acids Res., 2016

Literature information in PubChem: associations between PubChem records and scientific articles.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant

J. Cheminformatics, 2016

2014

PubChem BioAssay: 2014 update.

Yanli Wang, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant

Nucleic Acids Res., 2014

2012

PubChem's BioAssay Database.

Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant

Nucleic Acids Res., 2012

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.

Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko

Nucleic Acids Res., 2012

2010

An overview of the PubChem BioAssay resource.

Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A. Shoemaker, Tugba O. Suzek, Jiyao Wang, Jewen Xiao, Jian Zhang, Stephen H. Bryant

Nucleic Acids Res., 2010

Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites.

Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Tom Madej, Anna R. Panchenko

Nucleic Acids Res., 2010

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder.

Michail Yu. Lobanov, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Jessica H. Fong, Anna R. Panchenko, Oxana V. Galzitskaya

Nucleic Acids Res., 2010

Knowledge-based annotation of small molecule binding sites in proteins.

Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoemaker, Stephen H. Bryant, Anna R. Panchenko, Thomas Madej

BMC Bioinform., 2010

2009

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis.

Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Yu. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko

PLoS Comput. Biol., 2009

2008

Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval.

Benjamin A. Shoemaker, Anna R. Panchenko

Proceedings of the Protein-protein Interactions and Networks: Identification, 2008

2007

Deciphering Protein-Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners.

Benjamin A. Shoemaker, Anna R. Panchenko

PLoS Comput. Biol., 2007

Deciphering Protein-Protein Interactions. Part I. Experimental Techniques and Databases.

Benjamin A. Shoemaker, Anna R. Panchenko

PLoS Comput. Biol., 2007

2005

CDD: a Conserved Domain Database for protein classification.

Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant

Nucleic Acids Res., 2005

2003

CDD: a curated Entrez database of conserved domain alignments.

Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003

MMDB: Entrez's 3D-structure database.

Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant

Nucleic Acids Res., 2003

2002

MMDB: Entrez's 3D-structure database.

Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant

Nucleic Acids Res., 2002

CDD: a database of conserved domain alignments with links to domain three-dimensional structure.

Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant

Nucleic Acids Res., 2002