Ben Busby

According to our database, Ben Busby authored at least 16 papers between 2016 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

VariantSurvival: a tool to identify genotype-treatment response.

Thomas Krannich, Marina Herrera Sarrias, Hiba Ben Aribi, Moustafa Shokrof, Alfredo Iacoangeli, Ammar Al-Chalabi, Fritz J. Sedlazeck, Ben Busby, Ahmad Al Khleifat

Frontiers Bioinform., May, 2023

2020

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive.

Matthew N. Bernstein, Ariella L. Gladstein, Khun Zaw Latt, Emily Clough, Ben Busby, Allissa Dillman

F1000Research, 2020

2019

Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases.

Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun A. Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang

F1000Research, 2019

Magic-BLAST, an accurate RNA-seq aligner for long and short reads.

Grzegorz M. Boratyn, Jean Thierry-Mieg, Danielle Thierry-Mieg, Ben Busby, Thomas L. Madden

BMC Bioinform., 2019

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Thomas L. Madden, Ben Busby, Jian Ye

Bioinform., 2019

2018

Matchmaking in Bioinformatics.

Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers

F1000Research, 2018

NovoGraph: Genome graph construction from multiple long-read <i>de novo</i> assemblies.

Evan Biederstedt, Jeffrey C. Oliver, Nancy F. Hansen, Aarti Jajoo, Nathan A. Dunn, Andrew Olson, Ben Busby, Alexander T. Dilthey

F1000Research, 2018

2017

Viewing RNA-seq data on the entire human genome.

Eric M. Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby

F1000Research, 2017

Extending TCGA queries to automatically identify analogous genomic data from dbGaP.

Erin K. Wagner, Satyajeet Raje, Liz Amos, Jessica Kurata, Abhijit Badve, Yingquan Li, Ben Busby

F1000Research, 2017

DangerTrack: A scoring system to detect difficult-to-assess regions.

Igor Dolgalev, Fritz J. Sedlazeck, Ben Busby

F1000Research, 2017

PubRunner: A light-weight framework for updating text mining results.

Kishore R. Anekalla, J. P. Courneya, Nicolas Fiorini, Jake Lever, Michael Muchow, Ben Busby

F1000Research, 2017

MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed.

Satyajeet Raje, Ravi Teja Bhupatiraju, Abdelrahman Hosny, Ben Busby

Proceedings of the AMIA 2017, 2017

Harmonizing User-defined Phenotypic Variables using Latent Semantic Analysis (LSA) to Improve Data Discoverability in dbGaP.

Liz Amos, Satyajeet Raje, Masato Kimura, Preeti G. Kochar, Victoria Wilder, Ben Busby

Proceedings of the AMIA 2017, 2017

2016

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.

Eric Moyer, Megan Hastings Hagenauer, Matthew Lesko, Felix Francis, Oscar Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby

F1000Research, 2016

Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping.

Ben Busby, Matthew Lesko, Lisa Federer

F1000Research, 2016

A cloud-based learning environment for comparing RNA-seq aligners.

Elizabeth Baskin, Peter De-Ford, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby

F1000Research, 2016