Beifang Niu

According to our database, Beifang Niu authored at least 28 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Review of deep learning-based pathological image classification: From task-specific models to foundation models.

Haijing Luan, Kaixing Yang, Taiyuan Hu, Jifang Hu, Siyao Liu, Ruilin Li, Jiayin He, Rui Yan, Xiaobing Guo, Niansong Qian, Beifang Niu

Future Gener. Comput. Syst., 2025

2024

A comprehensive performance evaluation, comparison, and integration of computational methods for detecting and estimating cross-contamination of human samples in cancer next-generation sequencing analysis.

Huijuan Chen, Bing Wang, Lili Cai, Xiaotian Yang, Yali Hu, Yiran Zhang, Xue Leng, Wen Liu, Dongjie Fan, Beifang Niu, Qiming Zhou

J. Biomed. Informatics, 2024

Peridynamic modeling for multiscale heat transport of phonon Boltzmann transport equation.

Weier Liu, Yangde Feng, Ruilin Li, Chenhan Bai, Beifang Niu

Comput. Phys. Commun., 2024

2023

OncoCTMiner: streamlining precision oncology trial matching via molecular profile analysis.

Quan Xu, Yueyue Liu, Dawei Sun, Xiaoqian Huang, Feihong Li, Jincheng Zhai, Yang Li, Qiming Zhou, Niansong Qian, Beifang Niu

Database J. Biol. Databases Curation, 2023

Multi-class Cancer Classification of Whole Slide Images Through Transformer and Multiple Instance Learning.

Haijing Luan, Taiyuan Hu, Jifang Hu, Ruilin Li, Detao Ji, Jiayin He, Xiaohong Duan, Chunyan Yang, Yajun Gao, Fan Chen, Beifang Niu

Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

2022

ACMViz: a visual analytics approach to understand DRL-based autonomous control model.

Shiyu Cheng, Xiaochen Li, Guihua Shan, Beifang Niu, Yang Wang, Maokang Luo

J. Vis., 2022

OncoPubMiner: a platform for mining oncology publications.

Quan Xu, Yueyue Liu, Jifang Hu, Xiaohong Duan, Niuben Song, Jiale Zhou, Jincheng Zhai, Junyan Su, Siyao Liu, Fan Chen, Wei Zheng, Zhongjia Guo, Hexiang Li, Qiming Zhou, Beifang Niu

Briefings Bioinform., 2022

RabbitQCPlus: More Efficient Quality Control for Sequencing Data.

Lifeng Yan, Zekun Yin, Hao Zhang, Zhan Zhao, Mingkai Wang, André Müller, Robin Kobus, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Visual analysis of meteorological satellite data via model-agnostic meta-learning.

Shiyu Cheng, Han-Wei Shen, Guihua Shan, Beifang Niu, Weihua Bai

J. Vis., 2021

RabbitQC: high-speed scalable quality control for sequencing data.

Zekun Yin, Hao Zhang, Meiyang Liu, Wen Zhang, Honglei Song, Haidong Lan, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu

Bioinform., 2021

Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia.

Danyang Yuan, Xiaoyu He, Xinyin Han, Chunyan Yang, Fei Liu, Shuying Zhang, Haijing Luan, Ruilin Li, Jiayin He, Xiaohong Duan, Dongliang Wang, Qiming Zhou, Sujun Gao, Beifang Niu

Briefings Bioinform., 2021

Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes.

Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu

Briefings Bioinform., 2021

MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data.

Xinyin Han, Shuying Zhang, Daniel Cui Zhou, Dongliang Wang, Xiaoyu He, Danyang Yuan, Ruilin Li, Jiayin He, Xiaohong Duan, Michael C. Wendl, Li Ding, Beifang Niu

Briefings Bioinform., 2021

2020

HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures.

Shanyu Chen, Xiaoyu He, Ruilin Li, Xiaohong Duan, Beifang Niu

Bioinform., 2020

Digital Currency Investment Strategy Framework Based on Ranking.

Chuangchuang Dai, Xueying Yang, Meikang Qiu, Xiaobing Guo, Zhonghua Lu, Beifang Niu

Proceedings of the Algorithms and Architectures for Parallel Processing, 2020

Change-Encryption: Encryption Using Spatiotemporal Information as a Function Model.

Chuangchuang Dai, Haijing Luan, Qingbing Yu, Xiaoyu He, Yunhao Wang, Bincheng Shuai, Xiaobing Guo, Zhonghua Lu, Beifang Niu

Proceedings of the 7th IEEE International Conference on Cyber Security and Cloud Computing, 2020

2019

Gclust: A Parallel Clustering Tool for Microbial Genomic Data.

Ruilin Li, Xiaoyu He, Chuangchuang Dai, Haidong Zhu, Xianyu Lang, Wei Chen, Xiaodong Li, Dan Zhao, Yu Zhang, Xinyin Han, Tie Niu, Yi Zhao, Rongqiang Cao, Rong He, Zhonghua Lu, Xuebin Chi, Weizhong Li, Beifang Niu

Genom. Proteom. Bioinform., 2019

How Big Data and High-performance Computing Drive Brain Science.

Shanyu Chen, Zhipeng He, Xinyin Han, Xiaoyu He, Ruilin Li, Haidong Zhu, Dan Zhao, Chuangchuang Dai, Yu Zhang, Zhonghua Lu, Xuebin Chi, Beifang Niu

Genom. Proteom. Bioinform., 2019

Distributed Parameter Optimization Scheduling Strategy and System Design Based on Mesos.

Shuo Li, Zhonghua Lu, Yongze Sun, Sungen Deng, Beifang Niu

Proceedings of the 5th IEEE International Conference on Big Data Security on Cloud, 2019

DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences.

Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2014

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

Beifang Niu, Kai Ye, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl, Li Ding

Bioinform., 2014

2013

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.

Zhengwei Zhu, Beifang Niu, Jing Chen, Sitao Wu, Shulei Sun, Weizhong Li

Bioinform., 2013

2012

CD-HIT: accelerated for clustering the next-generation sequencing data.

Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li

Bioinform., 2012

Ultrafast clustering algorithms for metagenomic sequence analysis.

Weizhong Li, Limin Fu, Beifang Niu, Sitao Wu, John C. Wooley

Briefings Bioinform., 2012

2011

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.

Beifang Niu, Zhengwei Zhu, Limin Fu, Sitao Wu, Weizhong Li

Bioinform., 2011

2010

Artificial and natural duplicates in pyrosequencing reads of metagenomic data.

Beifang Niu, Limin Fu, Shulei Sun, Weizhong Li

BMC Bioinform., 2010

CD-HIT Suite: a web server for clustering and comparing biological sequences.

Ying Huang, Beifang Niu, Ying Gao, Limin Fu, Weizhong Li

Bioinform., 2010

2007

ScBioGrid: a commodity supercomputing environment supporting bioinformatics research.

Beifang Niu, Xianyu Lang, Zhonghua Lu, Xuebin Chi

Int. J. Comput. Math., 2007