Bastien Rance

According to our database, Bastien Rance authored at least 36 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Facilitating phenotyping from clinical texts: the medkit library.

Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet

CoRR, 2024

2023

Positionnement temporel indépendant des évènements : application à des textes cliniques en français.

Nesrine Bannour, Xavier Tannier, Bastien Rance, Aurélie Névéol

Proceedings of the Actes de CORIA-TALN 2023. Actes de la 30e Conférence sur le Traitement Automatique des Langues Naturelles, TALN 2023 - Volume 2 : travaux de recherche originaux, 2023

Event-independent temporal positioning: application to French clinical text.

Nesrine Bannour, Bastien Rance, Xavier Tannier, Aurélie Névéol

Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

2022

Privacy-preserving mimic models for clinical named entity recognition in French.

Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol

J. Biomed. Informatics, 2022

viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome.

Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, Alain Nicolas, Jessica Zucman-Rossi, Sandrine Imbeaud, Anita Burgun, Hélène Péré, Bastien Rance

Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Extraction of Tumor Response Criteria in Semi-Structured Imaging Report.

Valentin Pohyer, David Baudoin, Laure Fournier, Bastien Rance

Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

How to improve cancer Patients ENrollment within clinical trials from rEal Life databases using the OMOP oncology Extension: the French PENELOPE initiative.

Emmanuelle Kempf, Morgan Vaterkowski, Nicolas Griffon, Damien Leprovost, Stéphane Bréant, Patricia Serre, Alexandre Mouchet, Rafael Gozlan, Bastien Rance, Gilles Chatellier, Ali Bellamine, Marie Frank, Martin Hilka, Julien Guerin, Xavier Tannier, Alain Livartowski, Christel Daniel

Proceedings of the AMIA 2022, 2022

2021

A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.

Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun

BMC Medical Informatics Decis. Mak., 2021

Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.

William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance

J. Am. Medical Informatics Assoc., 2021

Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs.

Alice Rogier, Adrien Coulet, Bastien Rance

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.

Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset

Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

2019

What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse.

Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, Jean-Louis Paul, Laëtitia Mauge, Nadia Rivet, Angela Bonifati, Gilles Chatellier, Anita Burgun, Bastien Rance

Comput. Methods Programs Biomed., 2019

Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task?

Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital.

William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018

A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse.

Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance

J. Biomed. Informatics, 2018

The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest.

Rodolphe Jantzen, Bastien Rance, Sandrine Katsahian, Anita Burgun, Vincent Looten

Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018

Designing Scientific SPARQL Queries Using Autocompletion by Snippets.

Karima Rafes, Serge Abiteboul, Sarah Cohen Boulakia, Bastien Rance

Proceedings of the 14th IEEE International Conference on e-Science, 2018

2017

A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease.

Jean-Baptiste Escudié, Bastien Rance, Georgia Malamut, Sherine Khater, Anita Burgun, Christophe Cellier, Anne-Sophie Jannot

BMC Medical Informatics Decis. Mak., 2017

Exploring and visualizing multidimensional data in translational research platforms.

William Dunn Jr, Anita Burgun, Marie-Odile Krebs, Bastien Rance

Briefings Bioinform., 2017

2016

Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure.

Vincent Canuel, Hector Countouris, Pierre Laurent-Puig, Anita Burgun, Bastien Rance

Appl. Clin. Inform., 2016

2015

Translational research platforms integrating clinical and omics data: a review of publicly available solutions.

Vincent Canuel, Bastien Rance, Paul Avillach, Patrice Degoulet, Anita Burgun

Briefings Bioinform., 2015

Fingerprinting Biomedical Terminologies - Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles.

Bastien Rance, Thai Le, Olivier Bodenreider

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Reviewing 741 patients records in two hours with FASTVISU.

Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance

Proceedings of the AMIA 2015, 2015

2014

ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data.

Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen Boulakia

Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

How to de-identify a large clinical corpus in 10 days.

Cyril Grouin, Louise Deléger, Jean-Baptiste Escudié, Gregory Groisy, Anne-Sophie Jannot, Bastien Rance, Xavier Tannier, Aurélie Névéol

Proceedings of the AMIA 2014, 2014

2013

Leveraging Terminological Resources for Mapping between Rare Disease Information Sources.

Bastien Rance, Michelle Snyder, Janine Lewis, Olivier Bodenreider

Proceedings of the MEDINFO 2013, 2013

A systematic comparison of current sources of disease knowledge.

Aurélie Névéol, Bastien Rance, Zhiyong Lu

Proceedings of the AMIA 2013, 2013

Network Visualization of UMLS Source Vocabularies using Semantic Groups.

Thai Le, Bastien Rance, Olivier Bodenreider

Proceedings of the AMIA 2013, 2013

2012

A mutation-centric approach to identifying pharmacogenomic relations in text.

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider

J. Biomed. Informatics, 2012

2011

Integrating clinical research with the Healthcare Enterprise: From the RE-USE project to the EHR4CR platform.

Abdennaji El Fadly, Bastien Rance, Noël Lucas, Charles N. Mead, Gilles Chatellier, Pierre-Yves Lastic, Marie-Christine Jaulent, Christel Daniel

J. Biomed. Informatics, 2011

A Knowledge-Based Approach to Medical Records Retrieval.

Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson

Proceedings of The Twentieth Text REtrieval Conference, 2011

2010

The REUSE project: EHR as single datasource for biomedical research.

Abdennaji El Fadly, Noël Lucas, Bastien Rance, Philippe Verplancke, Pierre-Yves Lastic, Christel Daniel

Proceedings of the MEDINFO 2010, 2010

2009

Recherche d'associations séquentielles et alignement d'ontologies biologiques. (Search of sequential associations and biological ontologies alignment).

Bastien Rance

PhD thesis, 2009

Improving Bio-Ontologies Matching Using Types and Adaptive Weights.

Bastien Rance, Christine Froidevaux

Proceedings of the 4th International Workshop on Ontology Matching (OM-2009) collocated with the 8th International Semantic Web Conference (ISWC-2009) Chantilly, 2009

An Adaptive Combination of Matchers: Application to the Mapping of Biological Ontologies for Genome Annotation.

Bastien Rance, Jean-François Gibrat, Christine Froidevaux

Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2007

Extracting Sequential Nuggets of Knowledge.

Christine Froidevaux, Frédérique Lisacek, Bastien Rance

Proceedings of the Database and Expert Systems Applications, 18th International Conference, 2007