Barry Demchak

According to our database, Barry Demchak authored at least 24 papers between 2006 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

RCy3: Network biology using Cytoscape from within R.

Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico

F1000Research, 2019

2018

aMatReader: Importing adjacency matrices via Cytoscape Automation.

Brett Settle, David Otasek, John H. Morris, Barry Demchak

F1000Research, 2018

Copycat Layout: Network layout alignment via Cytoscape Automation.

Brett Settle, David Otasek, John H. Morris, Barry Demchak

F1000Research, 2018

The Cytoscape Automation app article collection.

Barry Demchak, David Otasek, Alexander R. Pico, Gary D. Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker

F1000Research, 2018

2017

Network propagation in the cytoscape cyberinfrastructure.

Daniel E. Carlin, Barry Demchak, Dexter Pratt, Eric Sage, Trey Ideker

PLoS Comput. Biol., 2017

2016

dot-app: a Graphviz-Cytoscape conversion plug-in.

Braxton Fitts, Ziran Zhang, Massoud Maher, Barry Demchak

F1000Research, 2016

2015

CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API.

Keiichiro Ono, Tanja Muetze, Georgi Kolishovski, Paul Shannon, Barry Demchak

F1000Research, 2015

cyNeo4j: connecting Neo4j and Cytoscape.

Georg Summer, Thomas Kelder, Keiichiro Ono, Marijana Radonjic, Stephane Heymans, Barry Demchak

Bioinform., 2015

2014

NeXO Web: the NeXO ontology database and visualization platform.

Janusz Dutkowski, Keiichiro Ono, Michael Kramer, Michael Yu, Dexter Pratt, Barry Demchak, Trey Ideker

Nucleic Acids Res., 2014

Porting and using PanGIA for Cytoscape 3: challenges and solutions.

David Welker, Barry Demchak

F1000Research, 2014

The Cytoscape app article collection.

Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William J. R. Longabaugh, Christian Tannus Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H. Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker

F1000Research, 2014

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters.

Keiichiro Ono, Barry Demchak, Trey Ideker

F1000Research, 2014

Cytoscape: the network visualization tool for GenomeSpace workflows.

Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov

F1000Research, 2014

2013

Policy driven development : SOA evolvability through late binding.

Barry Demchak

PhD thesis, 2013

2012

Policy Driven Development: Flexible Policy Insertion for Large Scale Systems.

Barry Demchak, Ingolf Krüger

Proceedings of the 2012 IEEE International Symposium on Policies for Distributed Systems and Networks, 2012

PALMS: A Modern Coevolution of Community and Computing Using Policy Driven Development.

Barry Demchak, Jacqueline Kerr, Fred Raab, Kevin Patrick, Ingolf H. Krüger

Proceedings of the 45th Hawaii International International Conference on Systems Science (HICSS-45 2012), 2012

Dynamic Service Composition and Deployment with OpenRichServices.

Ingolf Krüger, Barry Demchak, Massimiliano Menarini

Proceedings of the Software Service and Application Engineering, 2012

2008

Rich services: addressing challenges of ultra-large-scale software-intensive systems.

Barry Demchak, Vina Ermagan, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger, Massimiliano Menarini

Proceedings of the 2nd international workshop on Ultra-large-scale software-intensive systems, 2008

2007

The Treasure Map for Rich Services.

Barry Demchak, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger

Proceedings of the IEEE International Conference on Information Reuse and Integration, 2007

Rich Services: The Integration Piece of the SOA Puzzle.

Matthew Arrott, Barry Demchak, Vina Ermagan, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger, Massimiliano Menarini

Proceedings of the 2007 IEEE International Conference on Web Services (ICWS 2007), 2007

A Rich Services Approach to CoCoME.

Barry Demchak, Vina Ermagan, Emilia Farcas, To-ju Huang, Ingolf H. Krüger, Massimiliano Menarini

Proceedings of the Common Component Modeling Example: Comparing Software Component Models [result from the Dagstuhl research seminar for CoCoME, 2007

Data Quality for Situational Awareness during Mass-Casualty Events.

Barry Demchak, William G. Griswold, Leslie A. Lenert

Proceedings of the AMIA 2007, 2007

2006

Situational Awareness During Mass-Casualty Events: Command and Control.

Barry Demchak, Theodore C. Chan, William G. Griswold, Leslie Lenert

Proceedings of the AMIA 2006, 2006

Middleware for Reliable Mobile Medical Workflow Support in Disaster Settings.

Steven W. Brown, William G. Griswold, Barry Demchak, Leslie A. Lenert

Proceedings of the AMIA 2006, 2006