Baris E. Suzek

According to our database, Baris E. Suzek authored at least 19 papers between 2001 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

ProSetComp: A Platform for Protein Set Comparisons.

Erdem Turk, Turkan Arit, Delikanli Mertcan Susus, Ilayda Ucar, Baris E. Suzek

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2015

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

Baris E. Suzek, Yuqi Wang, Hongzhan Huang, Peter B. McGarvey, Cathy H. Wu

Bioinform., 2015

2013

A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers.

Andrew J. Buckler, David Paik, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Baris E. Suzek

J. Digit. Imaging, 2013

Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers.

Andrew J. Buckler, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik

J. Digit. Imaging, 2013

Erratum to: Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers.

Andrew J. Buckler, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik

J. Digit. Imaging, 2013

A fast Peptide Match service for UniProt Knowledgebase.

Chuming Chen, Zhiwen Li, Hongzhan Huang, Baris E. Suzek, Cathy H. Wu

Bioinform., 2013

In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases.

Peter B. McGarvey, Baris E. Suzek, Shruti Rao, Subha Madhavan, James N. Baraniuk, Samir Lababidi, Andrea Sutherland, Richard Forshee

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries.

Peter B. McGarvey, Sweta Ladwa, Mauricio Oberti, Anca Dana Dragomir, Erin K. Hedlund, David M. Tanenbaum, Baris E. Suzek, Subha Madhavan

J. Am. Medical Informatics Assoc., 2012

Life sciences domain analysis model.

Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew J. Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm

J. Am. Medical Informatics Assoc., 2012

2011

A comprehensive protein-centric ID mapping service for molecular data integration.

Hongzhan Huang, Peter B. McGarvey, Baris E. Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H. Wu

Bioinform., 2011

2009

Infrastructure for the life sciences: design and implementation of the UniProt website.

Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger

BMC Bioinform., 2009

2008

Orchestrating caGrid Services in Taverna.

Wei Tan, Ravi K. Madduri, Kiran Keshav, Baris E. Suzek, Scott Oster, Ian T. Foster

Proceedings of the 2008 IEEE International Conference on Web Services (ICWS 2008), 2008

2007

UniRef: comprehensive and non-redundant UniProt reference clusters.

Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu

Bioinform., 2007

2006

The Universal Protein Resource (UniProt): an expanding universe of protein information.

Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek

Nucleic Acids Res., 2006

2004

PIRSF: family classification system at the Protein Information Resource.

Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker

Nucleic Acids Res., 2004

The PIR integrated protein databases and data retrieval system.

Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu

Data Sci. J., 2004

2003

The Protein Information Resource.

Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker

Nucleic Acids Res., 2003

2002

The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker

Nucleic Acids Res., 2002

2001

A probabilistic method for identifying start codons in bacterial genomes.

Baris E. Suzek, Maria D. Ermolaeva, Mark J. Schreiber, Steven Salzberg

Bioinform., 2001