Barbara M. Bakker

According to our database, Barbara M. Bakker authored at least 10 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Analyzing postprandial metabolomics data using multiway models: a simulation study.

Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen, Age K. Smilde, Evrim Acar

BMC Bioinform., December, 2024

2021

Bistability in fatty-acid oxidation resulting from substrate inhibition.

Fentaw Abegaz, Anne-Claire M. F. Martines, Marcel A. Vieira-Lara, Melany Rios-Morales, Dirk-Jan Reijngoud, Ernst C. Wit, Barbara M. Bakker

PLoS Comput. Biol., 2021

2017

The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation.

Anne-Claire M. F. Martines, Karen van Eunen, Dirk-Jan Reijngoud, Barbara M. Bakker

PLoS Comput. Biol., 2017

2014

A model reduction method for biochemical reaction networks.

Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana

BMC Syst. Biol., 2014

2013

Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in <i>Trypanosoma brucei</i>.

Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej Trybilo, Nicole N. Driessen, David R. Gilbert, Rainer Breitling, Barbara M. Bakker, Michael P. Barrett

PLoS Comput. Biol., 2013

Biochemical Competition Makes Fatty-Acid β-Oxidation Vulnerable to Substrate Overload.

Karen van Eunen, Sereh M. J. Simons, Albert Gerding, Aycha Bleeker, Gijs den Besten, Catharina M. L. Touw, Sander M. Houten, Bert K. Groen, Klaas Krab, Dirk-Jan Reijngoud, Barbara M. Bakker

PLoS Comput. Biol., 2013

Model-order reduction of biochemical reaction networks.

Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana

Proceedings of the 12th European Control Conference, 2013

2012

<i>Testing Biochemistry</i> Revisited: How <i>In Vivo</i> Metabolism Can Be Understood from <i>In Vitro</i> Enzyme Kinetics.

Karen van Eunen, José A. L. Kiewiet, Hans V. Westerhoff, Barbara M. Bakker

PLoS Comput. Biol., 2012

Dynamic Modelling under Uncertainty: The Case of <i>Trypanosoma brucei</i> Energy Metabolism.

Fiona Achcar, Eduard J. Kerkhoven, Barbara M. Bakker, Michael P. Barrett, Rainer Breitling

PLoS Comput. Biol., 2012

2009

TIde: a software for the systematic scanning of drug targets in kinetic network models.

Marvin Schulz, Barbara M. Bakker, Edda Klipp

BMC Bioinform., 2009