Bairong Shen

According to our database, Bairong Shen authored at least 58 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

From molecular mechanisms of prostate cancer to translational applications: based on multi-omics fusion analysis and intelligent medicine.

Shumin Ren, Jiakun Li, Julián Dorado, Alejandro Pazos Sierra, Humberto González Díaz, Aliuska Duardo-Sánchez, Bairong Shen

Health Inf. Sci. Syst., December, 2024

DRGKB: a knowledgebase of worldwide diagnosis-related groups' practices for comparison, evaluation and knowledge-guided application.

Shumin Ren, Lin Yang, Jiale Du, Mengqiao He, Bairong Shen

Database J. Biol. Databases Curation, January, 2024

PPCRKB: a risk factor knowledge base of postoperative pulmonary complications.

Jianchao Duan, Peiyi Li, Aibin Shao, Xuechao Hao, Ruihao Zhou, Cheng Bi, Xingyun Liu, Weimin Li, Huadong Zhu, Guo Chen, Bairong Shen, Tao Zhu

Database J. Biol. Databases Curation, January, 2024

Medical intelligence for anxiety research: Insights from genetics, hormones, implant science, and smart devices with future strategies.

Faijan Akhtar, Md Belal Bin Heyat, Arshiya Sultana, Saba Parveen, Hafiz Muhammad Zeeshan, Stalin Fathima Merlin, Bairong Shen, Dustin Pomary, Jian Ping Li, Mohamad Sawan

WIREs Data. Mining. Knowl. Discov., 2024

Advancing Chinese biomedical text mining with community challenges.

Hui Zong, Rongrong Wu, Jiaxue Cha, Weizhe Feng, Erman Wu, Jiakun Li, Aibin Shao, Liang Tao, Zuofeng Li, Buzhou Tang, Bairong Shen

J. Biomed. Informatics, 2024

Bridging the Gaps: Utilizing Unlabeled Face Recognition Datasets to Boost Semi-Supervised Facial Expression Recognition.

Jie Song, Mengqiao He, Jinhua Feng, Bairong Shen

CoRR, 2024

Advancing Biomedical Text Mining with Community Challenges.

Hui Zong, Rongrong Wu, Jiaxue Cha, Erman Wu, Jiakun Li, Liang Tao, Zuofeng Li, Buzhou Tang, Bairong Shen

CoRR, 2024

PCAO2: an ontology for integration of prostate cancer associated genotypic, phenotypic and lifestyle data.

Chunjiang Yu, Hui Zong, Yalan Chen, Yibin Zhou, Xingyun Liu, Yuxin Lin, Jiakun Li, Xiaonan Zheng, Hua Min, Bairong Shen

Briefings Bioinform., 2024

2023

Myocardial infarction unveiled: Key miRNA players screened by a novel lncRNA-miRNA-mRNA network model.

Chaoying Zhan, Kai Liu, Yuxin Zhang, Yingbo Zhang, Mengqiao He, Rongrong Wu, Cheng Bi, Bairong Shen

Comput. Biol. Medicine, June, 2023

Translational informatics for human microbiota: data resources, models and applications.

Ke Shen, Ahmad Ud Din, Baivab Sinha, Yi Zhou, Fuliang Qian, Bairong Shen

Briefings Bioinform., May, 2023

CTRR-ncRNA: A Knowledgebase for Cancer Therapy Resistance and Recurrence Associated Non-coding RNAs.

Tong Tang, Xingyun Liu, Rongrong Wu, Li Shen, Shumin Ren, Bairong Shen

Genom. Proteom. Bioinform., April, 2023

Next-Generation Sequencing Markup Language (NGSML): A Medium for the Representation and Exchange of NGS Data.

Chunjiang Yu, Xin Qi, Wenying Yan, Wentao Wu, Bairong Shen

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

CD93 orchestrates the tumor microenvironment and predicts the molecular subtype and therapy response of bladder cancer.

Xiaonan Zheng, Hang Xu, Tianhai Lin, Ping Tan, Qiao Xiong, Xianyanling Yi, Shi Qiu, Lu Yang, Bairong Shen, Jianzhong Ai, Qiang Wei

Comput. Biol. Medicine, 2022

Biomarkers discovery for endometrial cancer: A graph convolutional sample network method.

Erman Wu, Xuemeng Fan, Tong Tang, Jingjing Li, Jiao Wang, Xingyun Liu, Zayatta Zungar, Jiaojiao Ren, Cong Wu, Bairong Shen

Comput. Biol. Medicine, 2022

CRPMKB: a knowledge base of cancer risk prediction models for systematic comparison and personalized applications.

Shumin Ren, Yanwen Jin, Yalan Chen, Bairong Shen

Bioinform., 2022

2021

PCLiON: An Ontology for Data Standardization and Sharing of Prostate Cancer Associated Lifestyles.

Yalan Chen, Chunjiang Yu, Xingyun Liu, Ting Xi, Guangfei Xu, Yan Sun, Fei Zhu, Bairong Shen

Int. J. Medical Informatics, 2021

HFBD: a biomarker knowledge database for heart failure heterogeneity and personalized applications.

Hongxin He, Manhong Shi, Yuxin Lin, Chaoying Zhan, Rongrong Wu, Cheng Bi, Xingyun Liu, Shumin Ren, Bairong Shen

Bioinform., 2021

CMBD: a manually curated cancer metabolic biomarker knowledge database.

Jing Chen, Xingyun Liu, Li Shen, Yuxin Lin, Bairong Shen

Database J. Biol. Databases Curation, 2021

2020

iODA: An integrated tool for analysis of cancer pathway consistency from heterogeneous multi-omics data.

Chunjiang Yu, Xin Qi, Yuxin Lin, Yin Li, Bairong Shen

J. Biomed. Informatics, 2020

CHDGKB: a knowledgebase for systematic understanding of genetic variations associated with non-syndromic congenital heart disease.

Lan Yang, Yang Yang, Xingyun Liu, Yongquan Chen, Yalan Chen, Yuxin Lin, Yan Sun, Bairong Shen

Database J. Biol. Databases Curation, 2020

Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs.

Rongrong Wu, Yuxin Lin, Xingyun Liu, Chaoying Zhan, Hongxin He, Manhong Shi, Zhi Jiang, Bairong Shen

Database J. Biol. Databases Curation, 2020

PCaLiStDB: a lifestyle database for precision prevention of prostate cancer.

Yalan Chen, Xingyun Liu, Yijun Yu, Chunjiang Yu, Lan Yang, Yuxin Lin, Ting Xi, Ziyun Ye, Zhe Feng, Bairong Shen

Database J. Biol. Databases Curation, 2020

Decoding competing endogenous RNA networks for cancer biomarker discovery.

Xin Qi, Yuxin Lin, Jiajia Chen, Bairong Shen

Briefings Bioinform., 2020

2019

Modeling and Simulation Studies of Complex Biological Systems for Precision Medicine and Healthcare.

Bairong Shen, Xiaoqian Jiang, Xingming Zhao

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations.

Bairong Shen, Yuxin Lin, Cheng Bi, Shengrong Zhou, Zhongchen Bai, Guangmin Zheng, Jing Zhou

Genom. Proteom. Bioinform., 2019

MIRKB: a myocardial infarction risk knowledge base.

Chaoying Zhan, Manhong Shi, Rongrong Wu, Hongxin He, Xingyun Liu, Bairong Shen

Database J. Biol. Databases Curation, 2019

Computer-aided biomarker discovery for precision medicine: data resources, models and applications.

Yuxin Lin, Fuliang Qian, Li Shen, Feifei Chen, Jiajia Chen, Bairong Shen

Briefings Bioinform., 2019

ECG Generation With Sequence Generative Adversarial Nets Optimized by Policy Gradient.

Fei Ye, Fei Zhu, Yuchen Fu, Bairong Shen

IEEE Access, 2019

2018

NGS-FC: A Next-Generation Sequencing Data Format Converter.

Chunjiang Yu, Wentao Wu, Jing Wang, Yuxin Lin, Yang Yang, Jiajia Chen, Fei Zhu, Bairong Shen

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Node-Weighted Amino Acid Network Strategy for Characterization and Identification of Protein Functional Residues.

Wenying Yan, Guang Hu, Zhongjie Liang, Jianhong Zhou, Yang Yang, Jiajia Chen, Bairong Shen

J. Chem. Inf. Model., 2018

CBD: a biomarker database for colorectal cancer.

Xueli Zhang, Xiao-Feng Sun, Yang Cao, Benchen Ye, Qiliang Peng, Xingyun Liu, Bairong Shen, Hong Zhang

Database J. Biol. Databases Curation, 2018

NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database.

Yang Yang, Chen Xu, Xingyun Liu, Chao Xu, Yuanyuan Zhang, Li Shen, Mauno Vihinen, Bairong Shen

Database J. Biol. Databases Curation, 2018

Identification of intrinsic disorder in complexes from Protein Data Bank.

Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2016

Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach.

Feixiong Cheng, Chuang Liu, Bairong Shen, Zhongming Zhao

BMC Syst. Biol., 2016

PON-Sol: prediction of effects of amino acid substitutions on protein solubility.

Yang Yang, Abhishek Niroula, Bairong Shen, Mauno Vihinen

Bioinform., 2016

2015

Deciphering oncogenic drivers: from single genes to integrated pathways.

Jiajia Chen, Maomin Sun, Bairong Shen

Briefings Bioinform., 2015

2014

Protein-protein interaction network constructing based on text mining and reinforcement learning with application to prostate cancer.

Fei Zhu, Quan Liu, Xiaofang Zhang, Bairong Shen

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Biomedical text mining and its applications in cancer research.

Fei Zhu, Preecha Patumcharoenpol, Cheng Zhang, Yang Yang, Jonathan H. Chan, Asawin Meechai, Wanwipa Vongsangnak, Bairong Shen

J. Biomed. Informatics, 2013

Translational Bioinformatics and Computational Systems Medicine.

Bairong Shen, Hong-Bin Shen, Tianhai Tian, Qiang Lü, Guang Hu

Comput. Math. Methods Medicine, 2013

Molecular Signature of Cancer at Gene Level or Pathway Level? Case Studies of Colorectal Cancer and Prostate Cancer Microarray Data.

Jiajia Chen, Ying Wang, Bairong Shen, Daqing Zhang

Comput. Math. Methods Medicine, 2013

Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer.

Yifei Tang, Wenying Yan, Jiajia Chen, Cheng Luo, Antti Kaipia, Bairong Shen

BMC Syst. Biol., 2013

InCoB2013 introduces Systems Biology as a major conference theme.

Christian Schönbach, Bairong Shen, Tin Wee Tan, Shoba Ranganathan

BMC Syst. Biol., 2013

Identifying novel glioma associated pathways based on systems biology level meta-analysis.

Yangfan Hu, Jinquan Li, Wenying Yan, Jiajia Chen, Yin Li, Guang Hu, Bairong Shen

BMC Syst. Biol., 2013

2012

Bibliome Mining Platform and Application for Building Metabolic Interaction Network.

Preecha Patumcharoenpol, Jonathan Hoyin Chan, Asawin Meechai, Bairong Shen, Wanwipa Vongsangnak

Proceedings of the 3rd International Conference on Computational Systems-Biology and Bioinformatics, 2012

Identification and Functional Annotation of Genome-Wide ER-Regulated Genes in Breast Cancer Based on ChIP-Seq Data.

Min Ding, Haiyun Wang, Jiajia Chen, Bairong Shen, Zhonghua Xu

Comput. Math. Methods Medicine, 2012

The preservation of bidirectional promoter architecture in eukaryotes: what is the driving force?

Chao Xu, Jiajia Chen, Bairong Shen

BMC Syst. Biol., 2012

Identifying novel glioma associated pathways based on integrated 'omics' data.

Yangfan Hu, Jinquan Li, Jiajia Chen, Guang Hu, Bairong Shen

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

An integrative framework for identifying consistent microRNA expression signatures associated with clear cell renal cell carcinoma.

Jiajia Chen, Daqing Zhang, Wenyu Zhang, Yifei Tang, Lingchuan Guo, Bairong Shen

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis.

Ying Wang, Jiajia Chen, Qinghui Li, Haiyun Wang, Ganqiang Liu, Qing Jing, Bairong Shen

Comput. Biol. Chem., 2011

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs.

Bingchuan Liu, Jiajia Chen, Bairong Shen

BMC Syst. Biol., 2011

2010

Pathway analysis of microRNAs in mouse heart development.

Ganqiang Liu, Min Ding, Haiyun Wang, Jinyan Huang, Qing Jing, Bairong Shen

Int. J. Bioinform. Res. Appl., 2010

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern.

Binhua Tang, Xuechen Wu, Ge Tan, Su-Shing Chen, Qing Jing, Bairong Shen

BMC Syst. Biol., 2010

Traditional Chinese Medicine data mining: Associating clinical cancer case studies with Traditional Chinese Medicine therapies.

Sushing Chen, Bairong Shen, Jiajia Chen, Yang Yang, Yuan Li

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

Model-Based Identification and Adaptive Control of the Core Module in a Typical Cell Cycle Pathway via Network and System Control Theories.

Binhua Tang, Li He, Qing Jing, Bairong Shen

Adv. Complex Syst., 2009

Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes.

Haiyun Wang, Min Ding, Xia Li, Bairong Shen

Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008

Towards patterns tree of gene coexpression in eukaryotic species.

Haiyun Wang, Qi Wang, Xia Li, Bairong Shen, Min Ding, Ziyin Shen

Bioinform., 2008

2007

System Stability Via Stepping Optimal Control: Theory and Applications.

Binhua Tang, Li He, Sushing Chen, Bairong Shen

Proceedings of the Progress in Artificial Intelligence, 2007

2003

RankViaContact: ranking and visualization of amino acid contacts.

Bairong Shen, Mauno Vihinen

Bioinform., 2003