Bahram Parvin

Bioinform., 2021

2020

A Practical Methodology for Generating High-Resolution 3D Models of Open-Pit Slopes Using UAVs: Flight Path Planning and Optimization.

[BibT_eX]

[DOI]

Rushikesh Battulwar

Jorge Valencia

Masoud Zare Naghadehi

Remote. Sens., 2020

Organoid model of mammographic density displays a higher frequency of aberrant colony formations with radiation exposure.

[BibT_eX]

[DOI]

Qingsu Cheng

Bioinform., 2020

YY1 is a cis-regulator in the organoid models of high mammographic density.

[BibT_eX]

[DOI]

Bioinform., 2020

2019

Deep fusion of contextual and object-based representations for delineation of multiple nuclear phenotypes.

[BibT_eX]

[DOI]

Bioinform., 2019

2018

Feature-Based Representation Improves Color Decomposition and Nuclear Detection Using a Convolutional Neural Network.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2018

Deep Learning Models Delineates Multiple Nuclear Phenotypes in H&E Stained Histology Sections.

[BibT_eX]

[DOI]

CoRR, 2018

Quantum cascade laser infrared microscopy differentiates malignant phenotypes in breast histology sections.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Deep Learning Models Differentiate Tumor Grades from H&E Stained Histology Sections.

[BibT_eX]

[DOI]

Alexander Borowsky

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Multilayer Encoder-Decoder Network for 3D Nuclear Segmentation in Spheroid Models of Human Mammary Epithelial Cell Lines.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2018

2017

When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.

[BibT_eX]

[DOI]

Medical Image Anal., 2017

Detection of nuclei in H&E stained sections using convolutional neural networks.

[BibT_eX]

[DOI]

Richard Cong

Proceedings of the 2017 IEEE EMBS International Conference on Biomedical & Health Informatics, 2017

2016

Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

2015

Scaling Up Graph-Based Semisupervised Learning via Prototype Vector Machines.

[BibT_eX]

[DOI]

IEEE Trans. Neural Networks Learn. Syst., 2015

EditorialMachine Learning and Data Mining in Medical Imaging.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2015

Automated Histology Analysis: Opportunities for signal processing.

[BibT_eX]

[DOI]

IEEE Signal Process. Mag., 2015

Coupled segmentation of nuclear and membrane-bound macromolecules through voting and multiphase level set.

[BibT_eX]

[DOI]

Quan Wen

Pattern Recognit., 2015

Stacked Predictive Sparse Decomposition for Classification of Histology Sections.

[BibT_eX]

[DOI]

Int. J. Comput. Vis., 2015

Classification of 3D Multicellular Organization in Phase Microscopy for High Throughput Screening of Therapeutic Targets.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE Winter Conference on Applications of Computer Vision, 2015

Nuclei segmentation via sparsity constrained convolutional regression.

[BibT_eX]

[DOI]

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Predictive sparse morphometric context for classification of histology sections.

[BibT_eX]

[DOI]

Paul T. Spellman

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014

Classification of Histology Sections via Multispectral Convolutional Sparse Coding.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE Conference on Computer Vision and Pattern Recognition, 2014

2013

Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2013

Integrated profiling of three dimensional cell culture models and 3D microscopy.

[BibT_eX]

[DOI]

Bioinform., 2013

Characterization of Tissue Histopathology via Predictive Sparse Decomposition and Spatial Pyramid Matching.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Classification of tumor histopathology via sparse feature learning.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Computer Vision, 2013

Classification of Tumor Histology via Morphometric Context.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE Conference on Computer Vision and Pattern Recognition, 2013

2012

Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2012

Detection of 3D filamentous networks from tomographic electron microscopy.

[BibT_eX]

[DOI]

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Learning invariant features of tumor signatures.

[BibT_eX]

[DOI]

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Molecular bases of morphometric composition in Glioblastoma multiforme.

[BibT_eX]

[DOI]

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Batch-invariant nuclear segmentation in whole mount histology sections.

[BibT_eX]

[DOI]

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Automatic segmentation and quantification of filamentous structures in electron tomography.

[BibT_eX]

[DOI]

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Iterative Tensor Voting for Perceptual Grouping of Ill-Defined Curvilinear Structures.

[BibT_eX]

[DOI]

Leandro A. Loss

George Bebis

IEEE Trans. Medical Imaging, 2011

Morphometic analysis of TCGA glioblastoma multiforme.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

2010

Multidimensional Profiling of Cell Surface Proteins and Nuclear Markers.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling.

[BibT_eX]

[DOI]

Alexander R. A. Anderson

PLoS Comput. Biol., 2010

Molecular Predictors of 3D Morphogenesis by Breast Cancer Cell Lines in 3D Culture.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2010

Prediction of epigenetically regulated genes in breast cancer cell lines.

[BibT_eX]

[DOI]

Victoria E. H. Carlton

BMC Bioinform., 2010

Sparse multitask regression for identifying common mechanism of response to therapeutic targets.

[BibT_eX]

[DOI]

Kai Zhang

Joe W. Gray

Bioinform., 2010

Chemical profiling of the plant cell wall through Raman microspectroscopy.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Multiphase level set for automated delineation of membrane-bound macromolecules.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009

Graphical methods for quantifying macromolecules through bright field imaging.

[BibT_eX]

[DOI]

Bioinform., 2009

A Delaunay Triangulation Approach for Segmenting Clumps of Nuclei.

[BibT_eX]

[DOI]

Quan Wen

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Tunable Tensor Voting for Regularizing Punctate Patterns of Membrane-Bound Protein Signals.

[BibT_eX]

[DOI]

Leandro A. Loss

George Bebis

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Morphometric Subtyping for a Panel of Breast Cancer Cell Lines.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Structural Annotation of EM Images by Graph Cut.

[BibT_eX]

[DOI]

Manfred Auer

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Prototype vector machine for large scale semi-supervised learning.

[BibT_eX]

[DOI]

Kai Zhang

James T. Kwok

Proceedings of the 26th Annual International Conference on Machine Learning, 2009

Tunable tensor voting improves grouping of membrane-bound macromolecules.

[BibT_eX]

[DOI]

Leandro A. Loss

George Bebis

Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2009

2008

Integrated profiling of cell surface protein and nuclear marker for discriminant analysis.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

A Bayesian approach for image segmentation with shape priors.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

2007

Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events.

[BibT_eX]

[DOI]

IEEE Trans. Image Process., 2007

Segmentation of heterogeneous blob objects through voting and level set formulation.

[BibT_eX]

[DOI]

Pattern Recognit. Lett., 2007

Segmentation of Mammosphere Structures from Volumetric Data.

[BibT_eX]

[DOI]

Ju Han

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Quantitative Representation of Three-dimensional Cell Culture Models.

[BibT_eX]

[DOI]

Catherine Park

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Perceptual Grouping of Membrane Signals in Cell-Based Assays.

[BibT_eX]

[DOI]

Kumari L. Andarawewa

Ju Han

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Modeling of Front Evolution with Graph Cut Optimization.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Image Processing, 2007

Spectral Decomposition of Signaling Networks.

[BibT_eX]

[DOI]

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006

3D Segmentation of Mammospheres for Localization Studies.

[BibT_eX]

[DOI]

Ju Han

Proceedings of the Advances in Visual Computing, Second International Symposium, 2006

Segmentation of Three Dimensional Cell Culture Models from a Single Focal Plane.

[BibT_eX]

[DOI]

Proceedings of the Advances in Visual Computing, Second International Symposium, 2006

2005

Geometric Approach to Segmentation and Protein Localization in Cell Cultured Assays.

[BibT_eX]

[DOI]

S. Raman

Christopher Maxwell

Proceedings of the Advances in Visual Computing, First International Symposium, 2005

2004

Localization of Saliency through Iterative Voting.

[BibT_eX]

[DOI]

Proceedings of the 17th International Conference on Pattern Recognition, 2004

Shape Metamorphism using p-Laplacian Equation.

[BibT_eX]

[DOI]

Proceedings of the 17th International Conference on Pattern Recognition, 2004

Perceptual Organization of Radial Symmetries.

[BibT_eX]

[DOI]

Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

2003

BioSig: an imaging bioinformatics system for phenotypic analysis.

[BibT_eX]

[DOI]

Gerald Fontenay

IEEE Trans. Syst. Man Cybern. Part B, 2003

High-resolution reconstruction of sparse data from dense low-resolution spatio-temporal data.

[BibT_eX]

[DOI]

IEEE Trans. Image Process., 2003

Harmonic cut and regularized centroid transform for localization of subcellular structures.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2003

2002

BioSig: An Imaging Bioinformatic System for Studying Phenomic.

[BibT_eX]

[DOI]

Gerald Fontenay

Computer, 2002

CHEF: Convex Hull of Elliptic Features for 3D Blob Detection.

[BibT_eX]

[DOI]

Proceedings of the 16th International Conference on Pattern Recognition, 2002

2001

Robust and efficient surface reconstruction from contours.

[BibT_eX]

[DOI]

Vis. Comput., 2001

Declarative Flow Control for Distributed Instrumentation.

[BibT_eX]

[DOI]

Proceedings of the First IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2001), 2001

2000

Model-based segmentation of nuclei.

[BibT_eX]

[DOI]

Pattern Recognit., 2000

Shape Recovery from Equal Thickness Contours.

[BibT_eX]

[DOI]

IEEE Trans. Pattern Anal. Mach. Intell., 2000

Singular Features in Sea Surface Temperature Data.

[BibT_eX]

[DOI]

Arthur Mariano

Proceedings of the 15th International Conference on Pattern Recognition, 2000

Surface Recovery from Planar Sectional Contours.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on Pattern Recognition, 2000

Feature Based Visualization of Geophysical Data.

[BibT_eX]

[DOI]

Proceedings of the 2000 Conference on Computer Vision and Pattern Recognition (CVPR 2000), 2000

A New Regularized Approach for Contour Morphing.

[BibT_eX]

[DOI]

Proceedings of the 2000 Conference on Computer Vision and Pattern Recognition (CVPR 2000), 2000

BioSig: A Bioinformatic System for Studying the Mechanism of Intra-Cell Signaling.

[BibT_eX]

[DOI]

Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

1999

An Algebraic Solution to Surface Recovery from Cross-Sectional Contours.

[BibT_eX]

[DOI]

Graph. Model. Image Process., 1999

DeepView: A Channel for Distributed Microscopy and Informatics.

[BibT_eX]

[DOI]

Proceedings of the ACM/IEEE Conference on Supercomputing, 1999

DeepView: A Channel for Distributed Microscopy.

[BibT_eX]

[DOI]

John R. Taylor

Proceedings of the International Symposium on Distributed Objects and Applications, 1999

1998

Surface reconstruction from sparse fringe contours.

[BibT_eX]

[DOI]

Proceedings of the Proceedings Fourth IEEE Workshop on Applications of Computer Vision, 1998

A Collaborative Framework for Distributed Microscopy.

[BibT_eX]

[DOI]

John R. Taylor

Proceedings of the ACM/IEEE Conference on Supercomputing, 1998

Curve evolution for corner enhancement.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth International Conference on Pattern Recognition, 1998

Shape from interference patterns.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth International Conference on Pattern Recognition, 1998

Shape from Equal Thickness Contours.

[BibT_eX]

[DOI]

Proceedings of the 1998 Conference on Computer Vision and Pattern Recognition (CVPR '98), 1998

1997

Visual Servoing for Online Facilities.

[BibT_eX]

[DOI]

Computer, 1997

1996

B-rep object description from multiple range views.

[BibT_eX]

[DOI]

Int. J. Comput. Vis., 1996

Visual servoing for micro-manipulation.

[BibT_eX]

[DOI]

Proceedings of the 13th International Conference on Pattern Recognition, 1996

Telepresence for In-situ Microscopy.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Multimedia Computing and Systems, 1996

1995

Tracking of Tubular Molecules for Scientific Applications.

[BibT_eX]

[DOI]

IEEE Trans. Pattern Anal. Mach. Intell., 1995

1994

Tracking of tubular objects for scientific applications.

[BibT_eX]

[DOI]

Carrie Johnston

Marcos Maestre

Proceedings of the Conference on Computer Vision and Pattern Recognition, 1994

1993

Pinta: a system for visualizing the anatomical structures of the brain from MR imaging.

[BibT_eX]

[DOI]

William E. Johnston

D. Roselli

Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

1992

B-rep from unregistered multiple range images.

[BibT_eX]

[DOI]

Proceedings of the 1992 IEEE International Conference on Robotics and Automation, 1992

1991

A layered network for the correspondence of 3D objects.

[BibT_eX]

[DOI]

Proceedings of the 1991 IEEE International Conference on Robotics and Automation, 1991

A dynamic system for object description and correspondence.

[BibT_eX]

[DOI]

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1991

1989

Adaptive multiscale feature extraction from range data.

[BibT_eX]

[DOI]

Comput. Vis. Graph. Image Process., 1989

1987

Segmentation of natural scenes.

[BibT_eX]

[DOI]

Bir Bhanu