B. F. Francis Ouellette

According to our database, B. F. Francis Ouellette authored at least 33 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Ten simple rules for writing a PLOS Computational Biology quick tips article.

Patricia M. Palagi, Russell Schwartz, Scott Markel, B. F. Francis Ouellette

PLoS Comput. Biol., December, 2023

2020

Genomic basis for RNA alterations in cancer.

Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks

Nat., 2020

2018

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins.

Michal Krassowski, Marta Paczkowska, Kim Cullion, Tina Huang, Irakli Dzneladze, B. F. Francis Ouellette, Joseph Tadashi Yamada, Amelie Fradet-Turcotte, Jüri Reimand

Nucleic Acids Res., 2018

2016

Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.

Michelle D. Brazas, B. F. Francis Ouellette

PLoS Comput. Biol., 2016

2015

A Quick Guide for Building a Successful Bioinformatics Community.

Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg

PLoS Comput. Biol., 2015

2013

Education in Computational Biology Today and Tomorrow.

Joanne A. Fox, B. F. Francis Ouellette

PLoS Comput. Biol., 2013

Navigating the changing learning landscape: perspective from bioinformatics.ca.

Michelle D. Brazas, B. F. Francis Ouellette

Briefings Bioinform., 2013

2012

A decade of web server updates at the bioinformatics links directory: 2003-2012.

Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette

Nucleic Acids Res., 2012

Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).

Warren A. Cheung, B. F. Francis Ouellette, Wyeth W. Wasserman

BMC Bioinform., 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.

Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder

Database J. Biol. Databases Curation, 2012

2011

CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data.

Kelvin Xi Zhang, B. F. Francis Ouellette

PLoS Comput. Biol., 2011

The 2011 bioinformatics links directory update: more resources, tools and databases and features to empower the bioinformatics community.

Michelle D. Brazas, David S. Yim, Joseph Tadashi Yamada, B. F. Francis Ouellette

Nucleic Acids Res., 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki

Database J. Biol. Databases Curation, 2011

2010

Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.

Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette

Nucleic Acids Res., 2010

Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence.

Kelvin Xi Zhang, B. F. Francis Ouellette

Bioinform., 2010

2009

Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette

Nucleic Acids Res., 2009

GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast.

Kelvin Xi Zhang, B. F. Francis Ouellette

BMC Bioinform., 2009

<i>DATABASE</i>: A new forum for biological databases and curation.

David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette

Database J. Biol. Databases Curation, 2009

2008

Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.

Michelle D. Brazas, Joanne A. Fox, Timothy Brown, Scott McMillan, B. F. Francis Ouellette

Nucleic Acids Res., 2008

A new approach to predict interactions between integral membrane proteins in yeast.

Kelvin Xi Zhang, B. F. Francis Ouellette

Proceedings of the IEEE Congress on Evolutionary Computation, 2008

2007

Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory.

Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette

Nucleic Acids Res., 2007

Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks.

Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette

Proceedings of the 21st International Conference on Advanced Information Networking and Applications (AINA 2007), 2007

2006

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.

Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette

Nucleic Acids Res., 2006

2005

The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers.

Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette

Nucleic Acids Res., 2005

The Biomolecular Interaction Network Database and related tools 2005 update.

C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, Martha Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue

Nucleic Acids Res., 2005

Atlas - a data warehouse for integrative bioinformatics.

Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette

BMC Bioinform., 2005

Satellog: A database for the identification and prioritization of satellite repeats in disease association studies.

Perseus I. Missirlis, Carri-Lyn R. Mead, Stefanie L. Butland, B. F. Francis Ouellette, Rebecca S. Devon, Blair R. Leavitt, Robert A. Holt

BMC Bioinform., 2005

2004

Pegasys: software for executing and integrating analyses of biological sequences.

Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette

BMC Bioinform., 2004

2003

GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results.

Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette

Bioinform., 2003

2002

Improving gene recognition accuracy by combining predictions from two gene-finding programs.

Sanja Rogic, B. F. Francis Ouellette, Alan K. Mackworth

Bioinform., 2002

2001

BIND - The Biomolecular Interaction Network Database.

Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue

Nucleic Acids Res., 2001

1999

GenBank.

Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp, David L. Wheeler

Nucleic Acids Res., 1999

1998

GenBank.

Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette

Nucleic Acids Res., 1998