Integrative random forest for gene regulatory network inference.
Bioinform., 2015
MODMatcher: Multi-Omics Data Matcher for Integrative Genomic Analysis.
PLoS Comput. Biol., 2014
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma.
Int. J. Comput. Biol. Drug Des., 2011
Inferring Signaling and Gene Regulatory Network from Genetic and Genomic Information.
Proceedings of the Handbook of Statistical Bioinformatics., 2011
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
BMC Bioinform., 2010
Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
An integrative approach for causal gene identification and gene regulatory pathway inference.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
Mapping gene ontology to proteins based on protein-protein interaction data.
Bioinform., 2004