2023
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing.
Bioinform., December, 2023

Comparative epigenome analysis using Infinium DNA methylation BeadChips.
Briefings Bioinform., January, 2023

Computational Methods for Single-cell DNA Methylome Analysis.
Genom. Proteom. Bioinform., 2023

2014
Towards accurate characterization of clonal heterogeneity based on structural variation.
BMC Bioinform., 2014

Bias from removing read duplication in ultra-deep sequencing experiments.
Bioinform., 2014

2013
Modeling Integrated Cellular Machinery Using Hybrid Petri-Boolean Networks.
PLoS Comput. Biol., 2013

2012
Quantifying and Assessing the Effect of Chemical Symmetry in Metabolic Pathways.
J. Chem. Inf. Model., 2012

2011
Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
BMC Bioinform., 2011

The strength of chemical linkage as a criterion for pruning metabolic graphs.
Bioinform., 2011