2017
Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast.
PLoS Comput. Biol., 2017

2016
Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection.
PLoS Comput. Biol., 2016

Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae.
BMC Syst. Biol., 2016

Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems.
Bioinform., 2016

2014
Topological augmentation to infer hidden processes in biological systems.
Bioinform., 2014

2010
Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates.
BMC Syst. Biol., 2010

2007
Efficient classification of complete parameter regions based on semidefinite programming.
BMC Bioinform., 2007

2005
FiatFlux - a software for metabolic flux analysis from <sup>13</sup>C-glucose experiments.
BMC Bioinform., 2005