2021
Ten simple rules to cultivate transdisciplinary collaboration in data science.
PLoS Comput. Biol., 2021

2019
datacarpentry/R-ecology-lesson: Data Carpentry: Data Analysis and Visualization in R for Ecologists, June 2019.
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Dataset, July, 2019

2018
Journal of Open Source Software (JOSS): design and first-year review.
PeerJ Comput. Sci., 2018

2017
Good enough practices in scientific computing.
PLoS Comput. Biol., 2017

2016
SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
BMC Bioinform., 2016

2008
Textpresso for Neuroscience: Searching the Full Text of Thousands of Neuroscience Research Papers.
Neuroinformatics, 2008

Textpresso - an Information Retrieval and Extraction System for Biological Literature.
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008

2000
Effects of Compression on Language Evolution.
Artif. Life, 2000

1999
Compression and Adaptation.
Proceedings of the Advances in Artificial Life, 5th European Conference, 1999