MotifGenie: a Python application for searching transcription factor binding sequences using ChIP-Seq datasets.
Bioinform., November, 2021
A new statistical model for extreme rainfall: POT-KumGP.
Earth Sci. Informatics, 2021
JOA: Joint Overlap Analysis of multiple genomic interval sets.
BMC Bioinform., 2019
Joint Overlap Analysis of Multiple Genomic Interval Sets.
CoRR, 2018
Comparison of tissue/disease specific integrated networks using directed graphlet signatures.
BMC Bioinform., 2017
A multiplex primer design algorithm for target amplification of continuous genomic regions.
BMC Bioinform., 2017
SUMONA: A supervised method for optimizing network alignment.
Comput. Biol. Chem., 2016
Unsupervised identification of redundant domain entries in InterPro database using clustering techniques.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015
A Divide and Conquer Approach for Construction of Large-Scale Signaling Networks from PPI and RNAi Data Using Linear Programming.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Large-Scale Signaling Network Reconstruction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Using network context as a filter for miRNA target prediction.
Biosyst., 2011
Parallelization of the functional flow algorithm for prediction of protein function using protein-protein interaction networks.
Proceedings of the 2011 International Conference on High Performance Computing & Simulation, 2011
A design goal and design pattern based approach for development of game engines for mobile platforms.
Proceedings of the 16th International Conference on Computer Games, 2011
Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering.
Int. J. Data Min. Bioinform., 2010
Integration of topological measures for eliminating non-specific interactions in protein interaction networks.
Discret. Appl. Math., 2009
RRW: repeated random walks on genome-scale protein networks for local cluster discovery.
BMC Bioinform., 2009
Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks.
Adv. Bioinformatics, 2009
Text classification in the Turkish marketing domain for context sensitive ad distribution.
Proceedings of the 24th International Symposium on Computer and Information Sciences, 2009
Discovering functional interaction patterns in protein-protein interaction networks.
BMC Bioinform., 2008
Searching for repeated video sequences.
Proceedings of the 9th ACM SIGMM International Workshop on Multimedia Information Retrieval, 2007
Integrating multi-attribute similarity networks for robust representation of the protein space.
Bioinform., 2006
Decision Tree Based Information Integration for Automated Protein Classification.
J. Bioinform. Comput. Biol., 2005
Analysis of protein-protein interaction networks using random walks.
Proceedings of the 5th international workshop on Bioinformatics, 2005
Protein Structure Alignment and Fast Similarity Search Using Local Shape Signatures.
J. Bioinform. Comput. Biol., 2004
ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure.
Proceedings of the Biocomputing 2004, 2004
Automated Protein Classification Using Consensus Decision.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
FPV: Fast Protein Visualization Using Java 3DTM.
Bioinform., 2003
FPV: Fast Protein Visualization Using Java 3D.
Proceedings of the 2003 ACM Symposium on Applied Computing (SAC), 2003
CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological Feature.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003