A Hardware Solver for Simultaneous Linear Equations with Multistage Interconnection Network.
Proceedings of the 14th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2024
CUDA offloading for energy-efficient and high-frame-rate simulations using tablets.
Concurr. Comput. Pract. Exp., 2021
Estimating Configuration Parameters of Pipelines for Accelerating N-Body Simulations with an FPGA using High-level Synthesis.
Proceedings of the 9th International Conference on Pervasive and Embedded Computing and Communication Systems, 2019
Comparison of the accuracy of periodic reaction field methods in molecular dynamics simulations of a model liquid crystal system.
J. Comput. Chem., 2015
Acceleration of the Fast Multipole Method on FPGA Devices.
IEICE Trans. Inf. Syst., 2015
Acceleration of Othello Computer Game Using an FPGA Tablet.
Proceedings of the Third International Symposium on Computing and Networking, 2015
Petascale molecular dynamics simulation using the fast multipole method on K computer.
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Comput. Phys. Commun., 2014
Petascale turbulence simulation using a highly parallel fast multipole method on GPUs.
Comput. Phys. Commun., 2013
GPU-accelerated computation of electron transfer.
J. Comput. Chem., 2012
DS-CUDA: A Middleware to Use Many GPUs in the Cloud Environment.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012
Petascale turbulence simulation using a highly parallel fast multipole method
CoRR, 2011
Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3.
Comput. J., 2011
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations.
PLoS Comput. Biol., 2009
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach.
J. Comput. Chem., 2009
Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence.
Comput. Phys. Commun., 2009
42 TFlops hierarchical <i>N</i>-body simulations on GPUs with applications in both astrophysics and turbulence.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model.
SIAM J. Sci. Comput., 2008
Overheads in Accelerating Molecular Dynamics Simulations with GPUs.
Proceedings of the Ninth International Conference on Parallel and Distributed Computing, 2008
A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3.
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Proceedings of the ACM/IEEE Conference on High Performance Networking and Computing, 2007
Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3.
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Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
Simulations of magnetic materials with MDGRAPE-2.
IBM J. Res. Dev., 2004
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the Parallel Computing: Software Technology, 2003
An 8.61 Tflop/s molecular dynamics simulation for NaCl with a special-purpose computer: MDM.
Proceedings of the 2001 ACM/IEEE conference on Supercomputing, 2001
1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM.
Proceedings of the Proceedings Supercomputing 2000, 2000