PascalX: a Python library for GWAS gene and pathway enrichment tests.
Bioinform., May, 2023
Cross-GWAS coherence test at the gene and pathway level.
PLoS Comput. Biol., September, 2022
Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment.
BMC Bioinform., 2022
MONET: a toolbox integrating top-performing methods for network modularization.
Bioinform., 2020
Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy.
PLoS Comput. Biol., 2017
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility.
PLoS Comput. Biol., 2017
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.
PLoS Comput. Biol., 2016
Iterative Estimation of Rigid-Body Transformations - Application to Robust Object Tracking and Iterative Closest Point.
J. Math. Imaging Vis., 2012
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.
Bioinform., 2012
Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome.
PLoS Comput. Biol., 2011
A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes.
Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011
Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way.
Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011
FastEpistasis: a high performance computing solution for quantitative trait epistasis.
Bioinform., 2010
ExpressionView - an interactive viewer for modules identified in gene expression data.
Bioinform., 2010
Modular analysis of gene expression data with R.
Bioinform., 2010
EuroDia: a beta-cell gene expression resource.
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Database J. Biol. Databases Curation, 2010
Set-up of a Unit-Selection Synthesis with a Prominent Voice.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006
Defining transcription modules using large-scale gene expression data.
Bioinform., 2004
Challenges and prospects in the analysis of large-scale gene expression data.
Briefings Bioinform., 2004