2024
Multi Scale Graph Neural Network for Alzheimer's Disease.
CoRR, 2024

Recon-all-clinical: Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI.
CoRR, 2024

Leveraging Pre-trained and Transformer-derived Embeddings from EHRs to Characterize Heterogeneity Across Alzheimer's Disease and Related Dementias.
CoRR, 2024

2023
causalCmprsk: An R package for nonparametric and Cox-based estimation of average treatment effects in competing risks data.
Comput. Methods Programs Biomed., December, 2023

AI-assisted prediction of differential response to antidepressant classes using electronic health records.
npj Digit. Medicine, 2023

Classification of neurologic outcomes from medical notes using natural language processing.
Expert Syst. Appl., 2023

Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

2022
Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets.
CoRR, 2022

Multi-confound regression adversarial network for deep learning-based diagnosis on highly heterogenous clinical data.
CoRR, 2022

Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining.
CoRR, 2022

Construction of a confounder-free clinical MRI dataset in the Mass General Brigham system for classification of Alzheimer's disease.
Artif. Intell. Medicine, 2022

Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and No Retraining.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

2021
Using Deep Learning to Identify Patients with Cognitive Impairment in Electronic Health Records.
CoRR, 2021

2020
Natural Language Processing to Detect Cognitive Concerns in Electronic Health Records Using Deep Learning.
CoRR, 2020

2014
Pain Research Forum: application of scientific social media frameworks in neuroscience.
Frontiers Neuroinformatics, 2014

Semantic Web repositories for genomics data using the eXframe platform.
J. Biomed. Semant., 2014

Using eXframe to Build Semantic Web Genomics Repositories.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

2012
Translating standards into practice - One Semantic Web API for Gene Expression.
J. Biomed. Informatics, 2012

2011
eXframe: reusable framework for storage, analysis and visualization of genomics experiments.
BMC Bioinform., 2011

An open annotation ontology for science on web 3.0.
J. Biomed. Semant., 2011

2009
Building biomedical web communities using a semantically aware content management system.
Briefings Bioinform., 2009

Scientific publications on Web 3.0.
Proceedings of the Rethinking Electronic Publishing: Innovation in Communication Paradigms and Technologies, 2009