2019
Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms.
[DOI]
Joanna Zyla
,
Michal Marczyk
,
Teresa Domaszewska
,
Stefan H. E. Kaufmann
,
Joanna Polanska
,
January 3rd Weiner
Bioinform., 2019

2018
The SysteMHC Atlas project.
[DOI]
Wenguang Shao
,
Patrick G. A. Pedrioli
,
Witold Wolski
,
Christian Scurtescu
,
Emanuel Schmid
,
Juan Antonio Vizcaíno
,
Mathieu Courcelles
,
Heiko Schuster
,
Daniel Kowalewski
,
Fabio Marino
,
Cecilia S. Lindestam Arlehamn
,
Kerrie Vaughan
,
Bjoern Peters
,
Alessandro Sette
,
Tom H. M. Ottenhoff
,
Krista E. Meijgaarden
,
Natalie Nieuwenhuizen
,
Stefan H. E. Kaufmann
,
Ralph Schlapbach
,
John C. Castle
,
Alexey I. Nesvizhskii
,
Morten Nielsen
,
Eric W. Deutsch
,
David S. Campbell
,
Robert L. Moritz
,
Roman A. Zubarev
,
Anders Jimmy Ytterberg
,
Anthony W. Purcell
,
Miguel Marcilla
,
Alberto Paradela
,
Qi Wang
,
Catherine E. Costello
,
Nicola Ternette
,
Peter A. van Veelen
,
Cécile A. C. M. van Els
,
Albert J. R. Heck
,
Gustavo A. de Souza
,
Ludvig Magne Sollid
,
Arie Admon
,
Stefan Stevanovic
,
Hans-Georg Rammensee
,
Pierre Thibault
,
Claude Perreault
,
Michal Bassani-Sternberg
,
Ruedi Aebersold
,
Etienne Caron
Nucleic Acids Res., 2018

2013
The <i>Mycobacterium tuberculosis</i> regulatory network and hypoxia.
[DOI]
James E. Galagan
,
Kyle J. Minch
,
Matthew Peterson
,
Anna Lyubetskaya
,
Elham Azizi
,
Linsday Sweet
,
Antonio Gomes
,
Tige R. Rustad
,
Gregory Dolganov
,
Irina Glotova
,
Thomas Abeel
,
Chris Mahwinney
,
Adam D. Kennedy
,
René Allard
,
William Brabant
,
Andrew Krueger
,
Suma Jaini
,
Brent Honda
,
Wen-Han Yu
,
Mark J. Hickey
,
Jeremy Zucker
,
Christopher Garay
,
Brian Weiner
,
Peter Sisk
,
Christian Stolte
,
Jessica K. Winkler
,
Yves Van de Peer
,
Paul Iazzetti
,
Diogo Camacho
,
Jonathan M. Dreyfuss
,
Yang Liu
,
Anca Dorhoi
,
Hans-Joachim Mollenkopf
,
Paul Drogaris
,
Julie Lamontagne
,
Yiyong Zhou
,
Julie Piquenot
,
Sang Tae Park
,
Sahadevan Raman
,
Stefan H. E. Kaufmann
,
Robert P. Mohney
,
Daniel Chelsky
,
D. Branch Moody
,
David R. Sherman
,
Gary K. Schoolnik
Nat., 2013

2010
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach.
[DOI]
Dirk Repsilber
,
Sabine Kern
,
Anna Telaar
,
Gerhard Walzl
,
Gillian F. Black
,
Joachim Selbig
,
Shreemanta K. Parida
,
Stefan H. E. Kaufmann
,
Marc Jacobsen
BMC Bioinform., 2010