Scalable Coupling of Deep Learning with Logical Reasoning.
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023
Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods.
Algorithms, 2021
Positive multistate protein design.
Bioinform., 2020
Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems.
J. Chem. Inf. Model., 2019
A structural homology approach for computational protein design with flexible backbone.
Bioinform., 2019
Guaranteed Diversity & Quality for the Weighted CSP.
Proceedings of the 31st IEEE International Conference on Tools with Artificial Intelligence, 2019
Cost function network-based design of protein-protein interactions: predicting changes in binding affinity.
Bioinform., 2018
Fitness landscape analysis around the optimum in computational protein design.
Proceedings of the Genetic and Evolutionary Computation Conference, 2018
Fast search algorithms for computational protein design.
J. Comput. Chem., 2016
Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure.
Proceedings of the Principles and Practice of Constraint Programming, 2016
Approximate Counting with Deterministic Guarantees for Affinity Computation.
Proceedings of the Modelling, Computation and Optimization in Information Systems and Management Sciences - Proceedings of the 3rd International Conference on Modelling, Computation and Optimization in Information Systems and Management Sciences, 2015
Computational protein design as an optimization problem.
Artif. Intell., 2014
A new framework for computational protein design through cost function network optimization.
Bioinform., 2013
Computational Protein Design as a Cost Function Network Optimization Problem.
Proceedings of the Principles and Practice of Constraint Programming, 2012
Encoding Molecular Motions in Voxel Maps.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
<i>Ab initio</i> determination of the flexibility of 2'-aminoribonucleosides and 2'-aminoarabinonucleosides inserted in duplexes.
J. Comput. Chem., 2008