Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

Text Classification and Prediction in the Legal Domain.

[DOI]

Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

Incorporating Zoning Information into Argument Mining from Biomedical Literature.

[DOI]

Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

Knowledge Graph Enrichment of a Semantic Search System for Construction Safety.

[DOI]

Proceedings of the Intelligent Systems and Applications, 2022

Emotion-aware and Intent-controlled Empathetic Response Generation using Hierarchical Transformer Network.

[DOI]

Tulika Saha

Proceedings of the International Joint Conference on Neural Networks, 2022

Readability Controllable Biomedical Document Summarization.

[DOI]

Zheheng Luo

Qianqian Xie

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022

GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization.

[DOI]

Proceedings of the 29th International Conference on Computational Linguistics, 2022

Named Entity Recognition for Cancer Immunology Research Using Distant Supervision.

[DOI]

Hai-Long Trieu

Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

GenCompareSum: a hybrid unsupervised summarization method using salience.

[DOI]

Jennifer Bishop

Qianqian Xie

Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

Learning Disentangled Representations of Negation and Uncertainty.

[DOI]

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

2021

The Role of Text Simplification Operations in Evaluation.

[DOI]

Laura Vásquez-Rodríguez

Matthew Shardlow

Proceedings of the First Workshop on Current Trends in Text Simplification (CTTS 2021) co-located with the 37th Conference of the Spanish Society for Natural Language Processing (SEPLN2021), 2021

Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors.

[DOI]

Fenia Christopoulou

Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021

GenerativeRE: Incorporating a Novel Copy Mechanism and Pretrained Model for Joint Entity and Relation Extraction.

[DOI]

Jiarun Cao

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2021, 2021

HSEarch: Semantic Search System for Workplace Accident Reports.

[DOI]

Proceedings of the Advances in Information Retrieval, 2021

Paladin: an annotation tool based on active and proactive learning.

[DOI]

Minh-Quoc Nghiem

Paul Baylis

Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: System Demonstrations, 2021

SpanEmo: Casting Multi-label Emotion Classification as Span-prediction.

[DOI]

Hassan Alhuzali

Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume, 2021

Predicting Sign of Depression via Using Frozen Pre-trained Models and Random Forest Classifier.

[DOI]

Hassan Alhuzali

Tianlin Zhang

Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

EPICURE: Ensemble Pretrained Models for Extracting Cancer Mutations from Literature.

[DOI]

Proceedings of the 34th IEEE International Symposium on Computer-Based Medical Systems, 2021

One-shot to Weakly-Supervised Relation Classification using Language Models.

[DOI]

Phong Le

Proceedings of the 3rd Conference on Automated Knowledge Base Construction, 2021

Investigating Text Simplification Evaluation.

[DOI]

Laura Vásquez-Rodríguez

Matthew Shardlow

Proceedings of the Findings of the Association for Computational Linguistics: ACL/IJCNLP 2021, 2021

2020

Cited text span identification for scientific summarisation using pre-trained encoders.

[DOI]

Scientometrics, 2020

An ensemble of neural models for nested adverse drug events and medication extraction with subwords.

[DOI]

J. Am. Medical Informatics Assoc., 2020

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods.

[DOI]

J. Am. Medical Informatics Assoc., 2020

Syntactically-informed word representations from graph neural network.

[DOI]

Neurocomputing, 2020

DeepEventMine: end-to-end neural nested event extraction from biomedical texts.

[DOI]

Hai-Long Trieu

Anh-Khoa Duong Nguyen

Anh Nguyen

Bioinform., 2020

Semantic Annotation for Improved Safety in Construction Work.

[DOI]

Proceedings of The 12th Language Resources and Evaluation Conference, 2020

A Neural Model for Aggregating Coreference Annotation in Crowdsourcing.

[DOI]

Maolin Li

Hiroya Takamura

Proceedings of the 28th International Conference on Computational Linguistics, 2020

Revisiting Unsupervised Relation Extraction.

[DOI]

Phong Le

Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020

2019

A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience.

[DOI]

Neuroinformatics, 2019

Improving clinical named entity recognition in Chinese using the graphical and phonetic feature.

[DOI]

Yifei Wang

BMC Medical Informatics Decis. Mak., 2019

Improving reference prioritisation with PICO recognition.

[DOI]

BMC Medical Informatics Decis. Mak., 2019

Quantifying risk factors in medical reports with a context-aware linear model.

[DOI]

J. Am. Medical Informatics Assoc., 2019

Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries.

[DOI]

BMC Bioinform., 2019

Thalia: semantic search engine for biomedical abstracts.

[DOI]

Axel J. Soto

Bioinform., 2019

NaCTeM-UoM @ CL-SciSumm 2019.

[DOI]

Proceedings of the 4th Joint Workshop on Bibliometric-enhanced Information Retrieval and Natural Language Processing for Digital Libraries (BIRNDL 2019) co-located with the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2019), 2019

Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks.

[DOI]

Maolin Li

Arvid Fahlström Myrman

Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection.

[DOI]

Kurt Junshean Espinosa

Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing, 2019

Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs.

[DOI]

Fenia Christopoulou

Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing, 2019

Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering.

[DOI]

Hai-Long Trieu

Anh-Khoa Duong Nguyen

Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

Improving classification of Adverse Drug Reactions through Using Sentiment Analysis and Transfer Learning.

[DOI]

Hassan Alhuzali

Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network.

[DOI]

Proceedings of the 57th Conference of the Association for Computational Linguistics, 2019

2018

Self-Tuned Descriptive Document Clustering Using a Predictive Network.

[DOI]

IEEE Trans. Knowl. Data Eng., 2018

Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods.

[DOI]

IEEE Trans. Pattern Anal. Mach. Intell., 2018

Identification of research hypotheses and new knowledge from scientific literature.

[DOI]

BMC Medical Informatics Decis. Mak., 2018

Annotation and detection of drug effects in text for pharmacovigilance.

[DOI]

J. Cheminformatics, 2018

LitPathExplorer: a confidence-based visual text analytics tool for exploring literature-enriched pathway models.

[DOI]

Bioinform., 2018

A Neural Layered Model for Nested Named Entity Recognition.

[DOI]

Meizhi Ju

Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018

A New Corpus to Support Text Mining for the Curation of Metabolites in the ChEBI Database.

[DOI]

Proceedings of the Eleventh International Conference on Language Resources and Evaluation, 2018

APLenty: annotation tool for creating high-quality datasets using active and proactive learning.

[DOI]

Minh-Quoc Nghiem

Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, 2018

Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts.

[DOI]

Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature.

[DOI]

Yifei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Walk-based Model on Entity Graphs for Relation Extraction.

[DOI]

Fenia Christopoulou

Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, 2018

2017

Enriching news events with meta-knowledge information.

[DOI]

Lang. Resour. Evaluation, 2017

Quantifying the Informativeness of Similarity Measurements.

[DOI]

J. Mach. Learn. Res., 2017

A semi-supervised approach using label propagation to support citation screening.

[DOI]

J. Biomed. Informatics, 2017

Using uncertainty to link and rank evidence from biomedical literature for model curation.

[DOI]

Bioinform., 2017

Identifying Personalised Treatments and Clinical Trials for Precision Medicine using Semantic Search with Thalia.

[DOI]

Axel J. Soto

Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

Extracting Gene-Disease Relations from Text to Support Biomarker Discovery.

[DOI]

Proceedings of the 2017 International Conference on Digital Health, 2017

Distributed Document and Phrase Co-embeddings for Descriptive Clustering.

[DOI]

Motoki Sato

Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Proactive Learning for Named Entity Recognition.

[DOI]

Maolin Li

Nhung T. H. Nguyen

Graciela Gonzalez-Hernandez

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

2016

The strategic impact of META-NET on the regional, national and international level.

[DOI]

Lang. Resour. Evaluation, 2016

Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts.

[DOI]

J. Biomed. Informatics, 2016

Topic detection using paragraph vectors to support active learning in systematic reviews.

[DOI]

Kazuma Hashimoto

J. Biomed. Informatics, 2016

Descriptive document clustering via discriminant learning in a co-embedded space of multilevel similarities.

[DOI]

Yalbi I. Balderas-Martínez

J. Assoc. Inf. Sci. Technol., 2016

Overview of the interactive task in BioCreative V.

[DOI]

Andrew Chatr-aryamontri

Stanley J. F. Laulederkind

Sherri Matis-Mitchell

Johanna R. McEntyre

Sandra E. Orchard

Sangya Pundir

Raul Rodriguez-Esteban

Database J. Biol. Databases Curation, 2016

Text mining resources for the life sciences.

[DOI]

Richard Eckart de Castilho

Stelios Piperidis

Database J. Biol. Databases Curation, 2016

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

[DOI]

Database J. Biol. Databases Curation, 2016

Argo: enabling the development of bespoke workflows and services for disease annotation.

[DOI]

Database J. Biol. Databases Curation, 2016

A Text Mining-Based Framework for Constructing an RDF-Compliant Biodiversity Knowledge Repository.

[DOI]

Proceedings of the Information Management and Big Data, 2016

Construction of a Biodiversity Knowledge Repository using a Text Mining-based Framework.

[DOI]

Riza Batista-Navarro

Chrysoula Zerva

Proceedings of the 3rd Annual International Symposium on Information Management and Big Data, 2016

NaCTeM at SemEval-2016 Task 1: Inferring sentence-level semantic similarity from an ensemble of complementary lexical and sentence-level features.

[DOI]

Nhung T. H. Nguyen

Matthew Shardlow

Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Supporting Biological Pathway Curation Through Text Mining.

[DOI]

Proceedings of the Data Analytics and Management in Data Intensive Domains, 2016

Text Mining Bridging the Gap between Knowledge and Text.

[DOI]

Proceedings of the Selected Papers of the XVIII International Conference on Data Analytics and Management in Data Intensive Domains (DAMDID/RCDL 2016), 2016

Ensemble Classification of Grants using LDA-based Features.

[DOI]

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Identifying Content Types of Messages Related to Open Source Software Projects.

[DOI]

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

A Text Mining Framework for Accelerating the Semantic Curation of Literature.

[DOI]

Jennifer Hammock

William Ulate

Proceedings of the Research and Advanced Technology for Digital Libraries, 2016

Learning to recognise named entities in tweets by exploiting weakly labelled data.

[DOI]

Kurt Junshean Espinosa

Proceedings of the 2nd Workshop on Noisy User-generated Text, 2016

2015

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

[DOI]

BMC Bioinform., December, 2015

Adaptable, high recall, event extraction system with minimal configuration.

[DOI]

BMC Bioinform., December, 2015

Using text mining techniques to extract phenotypic information from the PhenoCHF corpus.

[DOI]

Noha Alnazzawi

BMC Medical Informatics Decis. Mak., 2015

Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics.

[DOI]

J. Cheminformatics, 2015

Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary.

[DOI]

BMC Bioinform., 2015

Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows.

[DOI]

Xiao Fu

J. Biomed. Semant., 2015

Boosting drug named entity recognition using an aggregate classifier.

[DOI]

Artif. Intell. Medicine, 2015

OSSMETER: Automated Measurement and Analysis of Open Source Software.

[DOI]

Bruno Almeida

Alberto Berreteaga Barbero

Alessandra Bagnato

Proceedings of the Projects Showcase, 2015

Assessing the Use of Eclipse MDE Technologies in Open-Source Software Projects.

[DOI]

Dimitrios S. Kolovos

Nicholas Drivalos Matragkas

Richard F. Paige

Proceedings of the International Workshop on Open Source Software for Model Driven Engineering co-located with ACM/IEEE 18th International Conference on Model Driven Engineering Languages and Systems (MODELS 2015), 2015

Customised OCR correction for historical medical text.

[DOI]

Proceedings of the 2nd Digital Heritage International Congress, 2015

Semantically enhanced search system for historical medical archives.

[DOI]

Proceedings of the 2nd Digital Heritage International Congress, 2015

Event Extraction in pieces: Tackling the partial event identification problem on unseen corpora.

[DOI]

Chrysoula Zerva

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

Mining the Biomedical Literature.

[DOI]

Noha Alnazzawi

Proceedings of the Healthcare Data Analytics., 2015

2014

Reducing systematic review workload through certainty-based screening.

[DOI]

J. Biomed. Informatics, 2014

Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features.

[DOI]

Comput. Intell., 2014

Generalising semantic category disambiguation with large lexical resources for fun and profit.

[DOI]

J. Biomed. Semant., 2014

Anatomical entity mention recognition at literature scale.

[DOI]

Sampo Pyysalo

Bioinform., 2014

Text-mining-assisted biocuration workflows in Argo.

[DOI]

Database J. Biol. Databases Curation, 2014

Processing biological literature with customizable Web services supporting interoperable formats.

[DOI]

Database J. Biol. Databases Curation, 2014

A Hybrid Approach to Compiling Bilingual Dictionaries of Medical Terms from Parallel Corpora.

[DOI]

Proceedings of the Statistical Language and Speech Processing, 2014

Interoperability and Customisation of Annotation Schemata in Argo.

[DOI]

Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

The Meta-knowledge of Causality in Biomedical Scientific Discourse.

[DOI]

Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Locating Requests among Open Source Software Communication Messages.

[DOI]

Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora.

[DOI]

Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing, 2014

Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora.

[DOI]

Proceedings of the 14th Conference of the European Chapter of the Association for Computational Linguistics, 2014

Comparable Study of Event Extraction in Newswire and Biomedical Domains.

[DOI]

Proceedings of the COLING 2014, 2014

Keynote: Supporting evidence-based medicine using text mining.

[DOI]

Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014

Building a semantically annotated corpus for congestive heart and renal failure from clinical records and the literature.

[DOI]

Noha Alnazzawi

Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014

2013

Smart Health and Wellbeing.

[DOI]

Christopher C. Yang

Gondy Leroy

ACM Trans. Manag. Inf. Syst., 2013

Préface.

[DOI]

Nathalie Friburger

Sophie Rosset

Trait. Autom. des Langues, 2013

"Mining events from the literature for bioinformatics applications" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator.

[DOI]

SIGWEB Newsl., 2013

A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data.

[DOI]

Angelo C. Restificar

BMC Medical Informatics Decis. Mak., 2013

Recognising Discourse Causality Triggers in the Biomedical Domain.

[DOI]

J. Bioinform. Comput. Biol., 2013

Towards Event-based Discourse Analysis of Biomedical Text.

[DOI]

Int. J. Comput. Linguistics Appl., 2013

Something Old, Something New: Identifying Knowledge Source in Bio-events.

[DOI]

Int. J. Comput. Linguistics Appl., 2013

Negated bio-events: analysis and identification.

[DOI]

BMC Bioinform., 2013

Wide coverage biomedical event extraction using multiple partially overlapping corpora.

[DOI]

BMC Bioinform., 2013

BioCause: Annotating and analysing causality in the biomedical domain.

[DOI]

BMC Bioinform., 2013

Deploying and sharing U-Compare workflows as web services.

[DOI]

J. Biomed. Semant., 2013

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.

[DOI]

Bioinform., 2013

Dealing with Data Sparsity in Drug Named Entity Recognition.

[DOI]

Proceedings of the IEEE International Conference on Healthcare Informatics, 2013

News search using discourse analytics.

[DOI]

Proceedings of the 1st Digital Heritage International Congress, 2013

Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform.

[DOI]

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2013

Enhancing Search: Events and Their Discourse Context.

[DOI]

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2013

Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013.

[DOI]

Sampo Pyysalo

Tomoko Ohta

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013.

[DOI]

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

NaCTeM EventMine for BioNLP 2013 CG and PC tasks.

[DOI]

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

A hybrid approach to recognising discourse causality in the biomedical domain.

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Making UIMA Truly Interoperable with SPARQL.

[DOI]

Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, 2013

Towards a Better Understanding of Discourse: Integrating Multiple Discourse Annotation Perspectives Using UIMA.

[DOI]

Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, 2013

Development and Analysis of NLP Pipelines in Argo.

[DOI]

Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics, 2013

What causes a causal relation? Detecting Causal Triggers in Biomedical Scientific Discourse.

[DOI]

Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics, 2013

Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications.

[DOI]

Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics, 2013

Using a Random Forest Classifier to recognise translations of biomedical terms across languages.

[DOI]

Proceedings of the Sixth Workshop on Building and Using Comparable Corpora, 2013

2012

Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data.

[DOI]

IEEE Trans. Pattern Anal. Mach. Intell., 2012

ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials.

[DOI]

BMC Medical Informatics Decis. Mak., 2012

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.

[DOI]

BMC Bioinform., 2012

Extracting semantically enriched events from biomedical literature.

[DOI]

BMC Bioinform., 2012

Event extraction across multiple levels of biological organization.

[DOI]

Bioinform., 2012

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution.

[DOI]

Bioinform., 2012

Argo: an integrative, interactive, text mining-based workbench supporting curation.

[DOI]

Database J. Biol. Databases Curation, 2012

Developing Multilingual Text Mining Workflows in UIMA and U-Compare.

[DOI]

Proceedings of the Natural Language Processing and Information Systems, 2012

Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries.

[DOI]

Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench.

[DOI]

Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Identification of Manner in Bio-Events.

[DOI]

Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

A data and analysis resource for an experiment in text mining a collection of micro-blogs on a political topic.

[DOI]

Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Detecting and using document structure in scientific text.

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

ASCOT: assisting search and creation of clinical trials.

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

Biomedical text mining for semantic search and knowledge discovery.

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

Extracting Semantically Enriched Events from the Literature.

Proceedings of the KDIR 2012 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Barcelona, Spain, 4, 2012

brat: a Web-based Tool for NLP-Assisted Text Annotation.

[DOI]

Proceedings of the EACL 2012, 2012

DTMBIO 2012: international workshop on data and text mining in biomedical informatics.

[DOI]

Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Inferring appropriate eligibility criteria in clinical trial protocols without labeled data.

[DOI]

Angelo C. Restificar

Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

New Resources and Perspectives for Biomedical Event Extraction.

[DOI]

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.

[DOI]

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far.

[DOI]

Proceedings of the Workshop on Extra-Propositional Aspects of Meaning in Computational Linguistics, 2012

Building Trainable Taggers in a Web-based, UIMA-Supported NLP Workbench.

[DOI]

BalaKrishna Kolluru

Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics, 2012

2011

UKPMC: a full text article resource for the life sciences.

[DOI]

Nucleic Acids Res., 2011

Automatic extraction of microorganisms and their habitats from free text using text mining workflows.

[DOI]

J. Integr. Bioinform., 2011

U-Compare: A modular NLP workflow construction and evaluation system.

[DOI]

IBM J. Res. Dev., 2011

Extracting Secondary Bio-Event Arguments with Extraction Constraints.

[DOI]

Xinglong Wang

Comput. Intell., 2011

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature.

[DOI]

Dietrich Rebholz-Schuhmann

BMC Bioinform., 2011

Enriching a biomedical event corpus with meta-knowledge annotation.

[DOI]

BMC Bioinform., 2011

The BioLexicon: a large-scale terminological resource for biomedical text mining.

[DOI]

BMC Bioinform., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

[DOI]

BMC Bioinform., 2011

Automatic extraction of angiogenesis bioprocess from text.

[DOI]

Bioinform., 2011

Discovering and visualizing indirect associations between biomedical concepts.

[DOI]

Bioinform., 2011

AGRA: analysis of gene ranking algorithms.

[DOI]

Bioinform., 2011

Adding text mining workflows as web services to the BioCatalogue.

[DOI]

BalaKrishna Kolluru

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Extending a Tool Resource Framework with U-Compare.

[DOI]

Proceedings of the Human Language Technology Challenges for Computer Science and Linguistics, 2011

Enrichment and Structuring of Archival Description Metadata.

[DOI]

Proceedings of the 5th ACL Workshop on Language Technology for Cultural Heritage, 2011

Promoting Interoperability of Resources in META-SHARE.

[DOI]

Proceedings of the Workshop on Language Resources, 2011

Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications.

[DOI]

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

DTMBIO 2011: international workshop on data and textmining in biomedical informatics.

[DOI]

Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011.

[DOI]

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Building a Coreference-Annotated Corpus from the Domain of Biochemistry.

[DOI]

Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

2010

The Value of an in-Domain Lexicon in genomics QA.

[DOI]

J. Bioinform. Comput. Biol., 2010

Disambiguating the species of biomedical named entities using natural language parsers.

[DOI]

Xinglong Wang

Bioinform., 2010

Building a high-quality sense inventory for improved abbreviation disambiguation.

[DOI]

Bioinform., 2010

PathText: a text mining integrator for biological pathway visualizations.

[DOI]

Bioinform., 2010

Text mining meets workflow: linking U-Compare with Taverna.

[DOI]

Bioinform., 2010

Meta-Knowledge Annotation of Bio-Events.

[DOI]

Proceedings of the International Conference on Language Resources and Evaluation, 2010

U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library.

[DOI]

Proceedings of the International Conference on Language Resources and Evaluation, 2010

Evaluating a Text Mining Based Educational Search Portal.

[DOI]

Proceedings of the International Conference on Language Resources and Evaluation, 2010

Proximity-based Graph Embeddings for Multi-label Classification.

Proceedings of the KDIR 2010, 2010

Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation.

[DOI]

Proceedings of the COLING 2010, 2010

Towards Event Extraction from Full Texts on Infectious Diseases.

[DOI]

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Evaluating a meta-knowledge annotation scheme for bio-events.

[DOI]

Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, 2010

2009

Clinical text classification under the Open and Closed Topic Assumptions.

[DOI]

Brian Rea

William A. Baumgartner Jr.

Int. J. Data Min. Bioinform., 2009

Construction of an annotated corpus to support biomedical information extraction.

[DOI]

BMC Bioinform., 2009

U-Compare: share and compare text mining tools with UIMA.

[DOI]

Yoshinobu Kano

Bioinform., 2009

ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences.

[DOI]

Proceedings of the Actes de la 16ème conférence sur le Traitement Automatique des Langues Naturelles. Démonstrations, 2009

Improving Full Text Search with Text Mining Tools.

[DOI]

Proceedings of the Natural Language Processing and Information Systems, 2009

Classifying Relations for Biomedical Named Entity Disambiguation.

[DOI]

Xinglong Wang

Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing, 2009

Fast Full Parsing by Linear-Chain Conditional Random Fields.

[DOI]

Proceedings of the EACL 2009, 12th Conference of the European Chapter of the Association for Computational Linguistics, Proceedings of the Conference, Athens, Greece, March 30, 2009

Three BioNLP Tools Powered by a Biological Lexicon.

[DOI]

Proceedings of the EACL 2009, 12th Conference of the European Chapter of the Association for Computational Linguistics, Proceedings of the Conference, Athens, Greece, March 30, 2009

Bootstrapping a Verb Lexicon for Biomedical Information Extraction.

[DOI]

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2009

An Improved Automatic Term Recognition Method for Spanish.

[DOI]

Alberto Barrón-Cedeño

Gerardo Sierra

Patrick Drouin

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2009

Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty.

[DOI]

Proceedings of the ACL 2009, 2009

Text Mining for Biomedicine.

[DOI]

Proceedings of the Information Retrieval in Biomedicine, 2009

2008

Generating Natural Language specifications from UML class diagrams.

[DOI]

Farid Meziane

Nikos Athanasakis

Requir. Eng., 2008

Accelerating the annotation of sparse named entities by dynamic sentence selection.

[DOI]

BMC Bioinform., 2008

Normalizing biomedical terms by minimizing ambiguity and variability.

[DOI]

BMC Bioinform., 2008

How to make the most of NE dictionaries in statistical NER.

[DOI]

BMC Bioinform., 2008

Themes in biomedical natural language processing: BioNLP08.

[DOI]

BMC Bioinform., 2008

FACTA: a text search engine for finding associated biomedical concepts.

[DOI]

Bioinform., 2008

Kleio: a knowledge-enriched information retrieval system for biology.

[DOI]

Proceedings of the 31st Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2008

Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an Example.

[DOI]

Yuichiroh Matsubayashi

Proceedings of the Biocomputing 2008, 2008

Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora.

[DOI]

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Connecting Text Mining and Pathways using the PathText Resource.

[DOI]

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Clustering Related Terms with Definitions.

[DOI]

Scott Piao

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Towards Data and Goal Oriented Analysis: Tool Inter-operability and Combinatorial Comparison.

[DOI]

Proceedings of the Third International Joint Conference on Natural Language Processing, 2008

Identifying Sections in Scientific Abstracts using Conditional Random Fields.

[DOI]

Proceedings of the Third International Joint Conference on Natural Language Processing, 2008

A Discriminative Candidate Generator for String Transformations.

[DOI]

Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing, 2008

Event Frame Extraction Based on a Gene Regulation Corpus.

[DOI]

Proceedings of the COLING 2008, 2008

A Discriminative Alignment Model for Abbreviation Recognition.

[DOI]

Proceedings of the COLING 2008, 2008

2007

Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.

[DOI]

Bioinform., 2007

Multi-topic Aspects in Clinical Text Classification.

[DOI]

Brian Rea

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

An Annotation Type System for a Data-Driven NLP Pipeline.

[DOI]

Proceedings of the Linguistic Annotation Workshop, 2007

Text Mining Techniques for Building a Biolexicon.

[DOI]

Proceedings of the Australasian Language Technology Workshop, 2007

2006

Mining semantically related terms from biomedical literature.

[DOI]

ACM Trans. Asian Lang. Inf. Process., 2006

Terminology-based knowledge mining for new knowledge discovery.

[DOI]

Hideki Mima

Katsumori Matsushima

ACM Trans. Asian Lang. Inf. Process., 2006

Proceedings of the Second International Symposium for Semantic Mining in Biomedicine.

[DOI]

Juliane Fluck

BMC Bioinform., 2006

Building an abbreviation dictionary using a term recognition approach.

[DOI]

Bioinform., 2006

Clustering acronyms in biomedical text for disambiguation.

[DOI]

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

Towards a terminological resource for biomedical text mining.

[DOI]

Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

A Term Recognition Approach to Acronym Recognition.

[DOI]

Proceedings of the ACL 2006, 2006

2005

Thesaurus or Logical Ontology, Which One Do We Need for Text Mining?

[DOI]

Lang. Resour. Evaluation, 2005

MaSTerClass: a case-based reasoning system for the classification of biomedical terms.

[DOI]

Bioinform., 2005

Text mining and ontologies in biomedicine: Making sense of raw text.

[DOI]

Briefings Bioinform., 2005

A Flexible Measure of Contextual Similarity for Biomedical Terms.

[DOI]

Proceedings of the Biocomputing 2005, 2005

Developing a Robust Part-of-Speech Tagger for Biomedical Text.

[DOI]

Proceedings of the Advances in Informatics, 2005

A Machine Learning Approach to Acronym Generation.

[DOI]

Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, 2005

2004

Using automatically learnt verb selectional preferences for classification of biomedical terms.

[DOI]

J. Biomed. Informatics, 2004

Introduction: named entity recognition in biomedicine.

[DOI]

Carol Friedman

J. Biomed. Informatics, 2004

Mining Biomedical Abstracts: What's in a Term?

[DOI]

Proceedings of the Natural Language Processing, 2004

Introduction (Thematic Session: Text Mining in Biomedicine).

[DOI]

Jong C. Park

Proceedings of the Natural Language Processing, 2004

Learning to Classify Biomedical Terms Through Literature Mining and Genetic Algorithms..

[DOI]

Proceedings of the Intelligent Data Engineering and Automated Learning, 2004

Enhancing automatic term recognition through recognition of variation.

[DOI]

Proceedings of the COLING 2004, 2004

2003

Terminology-driven Mining of Biomedical Literature.

[DOI]

Bioinform., 2003

An Integrated Term-Based Corpus Query System.

[DOI]

Proceedings of the EACL 2003, 2003

Using Domain-Specific Verbs for Term Classification.

[DOI]

Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

Selecting Text Features for Gene Name Classification: from Documents to Terms.

[DOI]

Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

2002

Terminology-driven literature mining and knowledge acquisition in biomedicine.

[DOI]

Int. J. Medical Informatics, 2002

Spotting and Discovering Terms through Natural Language Processing by Christian Jacquemin.

[DOI]

Comput. Linguistics, 2002

Term Clustering Using a Corpus-Based Similarity Measure.

[DOI]

Proceedings of the Text, Speech and Dialogue, 5th International Conference, 2002

Tuning Context Features with Genetic Algorithms.

[DOI]

Proceedings of the Third International Conference on Language Resources and Evaluation, 2002

Automatic Acronym Acquisition and Term Variation Management within Domain-Specific Texts.

[DOI]

Proceedings of the Third International Conference on Language Resources and Evaluation, 2002

Supervised Learning of Term Similarities.

[DOI]

Proceedings of the Intelligent Data Engineering and Automated Learning, 2002

A Methodology for Terminology-based Knowledge Acquisition and Integration.

[DOI]

Proceedings of the 19th International Conference on Computational Linguistics, 2002

2001

The ATRACT Workbench: Automatic Term Recognition and Clustering for Terms.

[DOI]

Hideki Mima

Proceedings of the Text, Speech and Dialogue, 4th International Conference, 2001

2000

Automatic recognition of multi-word terms: the C-value/NC-value method.

[DOI]

Katerina T. Frantzi

Hideki Mima

Int. J. Digit. Libr., 2000

Creating and Using Domain-specific Ontologies for Terminological Applications.

[DOI]

Diana Maynard

Proceedings of the Second International Conference on Language Resources and Evaluation, 2000

Identifying Terms by their Family and Friends.

[DOI]

Diana Maynard

Proceedings of the COLING 2000, 18th International Conference on Computational Linguistics, Proceedings of the Conference, 2 Volumes, July 31, 2000

1999

Classifying Technical Terms.

[DOI]

Katerina T. Frantzi

Proceedings of the Electronic Publishing '99, Redefining the Information Chain - New Ways and Voices: 3rd ICCC/IFIP conference held at the University of Karlskrona/Ronneby, 1999

1998

Term sense disambiguation using a domain-specific thesaurus.

Diana Maynard

Proceedings of the First International Conference on Language Resources and Evaluation, 1998

The C-value/NC-value Method of Automatic Recognition for Multi-Word Terms.

[DOI]

Katerina T. Frantzi