2021
Multi-View Deep Learning Framework for Predicting Patient Expenditure in Healthcare.
IEEE Open J. Comput. Soc., 2021
Pre-training transformer-based framework on large-scale pediatric claims data for downstream population-specific tasks.
CoRR, 2021
COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval.
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021
CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Transformer-based unsupervised patient representation learning based on medical claims for risk stratification and analysis.
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021
2020
COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval.
CoRR, 2020
Graph embedding on biomedical networks: methods, applications and evaluations.
Bioinform., 2020
Multilevel Self-Attention Model and Its Use on Medical Risk Prediction.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
Sequence-to-Set Semantic Tagging for Complex Query Reformulation and Automated Text Categorization in Biomedical IR using Self-Attention.
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020
Clinical Phrase Mining with Language Models.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Tasks Associated With Extreme After-hours EHR Use Among Ambulatory Care Pediatricians.
Proceedings of the AMIA 2020, 2020
Rationalizing Medical Relation Prediction from Corpus-level Statistics.
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020
2019
Transcending Dimensions: a Comparative Analysis of Cloaca Imaging in Advancing the Surgeon's Understanding of Complex Anatomy.
J. Digit. Imaging, 2019
Sequence-to-Set Semantic Tagging: End-to-End Multi-label Prediction using Neural Attention for Complex Query Reformulation and Automated Text Categorization.
CoRR, 2019
Distributed representation of patients and its use for medical cost prediction.
CoRR, 2019
Device-free Sleep Stage Recognition through Bed Frame Vibration Sensing.
Proceedings of the 1st ACM International Workshop on Device-Free Human Sensing, 2019
SurfCon: Synonym Discovery on Privacy-Aware Clinical Data.
Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2019
Identifying Candidates for Medical Coding Audits: Demonstration of a Data Driven Approach to Improve Medicare Severity Diagnosis-Related Group Coding Compliance.
Proceedings of the Health Information Science - 8th International Conference, 2019
2018
Phrase2VecGLM: Neural generalized language model-based semantic tagging for complex query reformulation in medical IR.
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018
Prediction of Clinical Outcomes of Spinal Muscular Atrophy Using Motion Tracking Data and Elastic Net Regression.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
DeepChild: Hospitalization Prediction via Neural Network.
Proceedings of the AMIA 2018, 2018
A roadmap of transition to health independence: A patient-centered study of self-management and digital-health solutions among teens with chronic conditions.
Proceedings of the AMIA 2018, 2018
Char2Vec: Learning the Semantic Embedding of Rare and Unseen Words in the Biomedical Literature.
Proceedings of the AMIA 2018, 2018
Variation in After-hours EHR Usage among Ambulatory Care Physicians.
Proceedings of the AMIA 2018, 2018
2017
Simplified Readability Metric Drives Improvement of Radiology Reports: an Experiment on Ultrasound Reports at a Pediatric Hospital.
J. Digit. Imaging, 2017
Clinical exome sequencing reports: current informatics practice and future opportunities.
J. Am. Medical Informatics Assoc., 2017
Sharing exome sequencing data between Clinical Sequencing Labs and Healthcare Providers.
Proceedings of the AMIA 2017, 2017
DeepSuggest: Query Expansion for Clinical Notes by Deep Learning.
Proceedings of the AMIA 2017, 2017
Genome Dashboard: An Interactive Tool for the Exploration of Human Genomic Variants and Phenotypic Associations.
Proceedings of the AMIA 2017, 2017
Vitals Risk Index: A Simplified Pediatric Early Warning Index that Relies Solely on Objective Measures.
Proceedings of the AMIA 2017, 2017
2016
WHATIF: An open-source desktop application for extraction and management of the incidental findings from next-generation sequencing variant data.
Comput. Biol. Medicine, 2016
'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities.
Database J. Biol. Databases Curation, 2016
Evaluation of a Machine Learning Method to Rank PubMed Central Articles For Clinical Relevancy: NCH at TREC 2016 Clinical Decision Support Track.
Proceedings of The Twenty-Fifth Text REtrieval Conference, 2016
2015
Investigating properties of a family of quantum Rényi divergences.
Quantum Inf. Process., 2015
Application of clinical text data for phenome-wide association studies (PheWASs).
Bioinform., 2015
2014
Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing.
Proceedings of the 23rd USENIX Security Symposium, San Diego, CA, USA, August 20-22, 2014., 2014
Mining massive SNP data for identifying associated SNPs and uncovering gene relationships.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
2013
The disease and gene annotations (DGA): an annotation resource for human disease.
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Nucleic Acids Res., 2013
An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics.
Proceedings of the MEDINFO 2013, 2013
2011
<i>PLoS Computational Biology</i> Conference Postcards from ISMB/ECCB 2011.
PLoS Comput. Biol., 2011
2010
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
BMC Bioinform., 2010
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
BMC Bioinform., 2010
2009
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.
Bioinform., 2009
2008
A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays.
Int. J. Comput. Biol. Drug Des., 2008
2009 and beyond: the decade of personalised medicine.
Int. J. Comput. Biol. Drug Des., 2008
<i>lumi</i>: a pipeline for processing Illumina microarray.
Bioinform., 2008
2007
Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.
Bioinform., 2006
2004
MedlineR: an open source library in R for Medline literature data mining.
Bioinform., 2004
2002
Sequential modeling for identifying CpG island locations in human genome.
IEEE Signal Process. Lett., 2002
Applications of Tree-Maps to hierarchical biological data.
Bioinform., 2002
ICA and PLS modeling for functional analysis and drug sensitivity for DNA microarray signals.
Proceedings of the IEEE International Conference on Acoustics, 2002
2001
Critical Assessment of Microarray Data Analysis: the 2001 challenge.
Bioinform., 2001
Extracting knowledge from gene expression data: A case study of Batten Disease.
Proceedings of the ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2001), 2001